Evidence map›Paper›PMID 27580164›Full record

ArticleJournal of microscopy2017

Preserving elemental content in adherent mammalian cells for analysis by synchrotron-based x-ray fluorescence microscopy.

Qiaoling Jin, Tatjana Paunesku, Barry Lai, Sophie-Charlotte Gleber, S I Chen, Lydia Finney, David Vine, Stefan Vogt, Gayle Woloschak, Chris Jacobsen

Open access · hybridAbstract read
In one paragraph

Article in Journal of microscopy, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
10.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 110 citations in OpenAlex.

  1. Article
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  4. Article
  5. Preservation artifacts in zebrafish X-ray fluorescence imaging.Metallomics : integrated biometal science · 2026
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  11. Review
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  19. Assessing Cellular Uptake of Exogenous Coenzyme QAntioxidants (Basel, Switzerland) · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Qiaoling JinDepartment of Physics & Astronomy, Weinberg College of Arts and Sciences, Evanston, Illinois, U.S.A.
Tatjana PauneskuDepartment of Radiation Oncology, Northwestern University, Chicago, Illinois, U.S.A.
Barry LaiAdvanced Photon Source, Argonne National Laboratory, Argonne, Illinois, U.S.A.
Sophie-Charlotte GleberAdvanced Photon Source, Argonne National Laboratory, Argonne, Illinois, U.S.A.
S I ChenAdvanced Photon Source, Argonne National Laboratory, Argonne, Illinois, U.S.A.
Lydia FinneyAdvanced Photon Source, Argonne National Laboratory, Argonne, Illinois, U.S.A.
David VineAdvanced Photon Source, Argonne National Laboratory, Argonne, Illinois, U.S.A.
Stefan VogtAdvanced Photon Source, Argonne National Laboratory, Argonne, Illinois, U.S.A.
Gayle WoloschakDepartment of Radiation Oncology, Northwestern University, Chicago, Illinois, U.S.A.
Chris JacobsenDepartment of Physics & Astronomy, Weinberg College of Arts and Sciences, Evanston, Illinois, U.S.A.
Argonne National Laboratory · USNorthwestern Medicine · USNorthwestern University · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
Cryo ptychography combined with x-ray fluorescence analysis of metals in cellsR01GM104530 · NIGMS · NORTHWESTERN UNIVERSITY · PI JACOBSEN, CHRIS JOHNSON · 2013 to 2020
$2.2M
NCI NIH HHS P30 CA060553NIGMS NIH HHS R01 GM104530
6 · The paper itself

Abstract

Trace metals play important roles in biological function, and x-ray fluorescence microscopy (XFM) provides a way to quantitatively image their distribution within cells. The faithfulness of these measurements is dependent on proper sample preparation. Using mouse embryonic fibroblast NIH/3T3 cells as an example, we compare various approaches to the preparation of adherent mammalian cells for XFM imaging under ambient temperature. Direct side-by-side comparison shows that plunge-freezing-based cryoimmobilization provides more faithful preservation than conventional chemical fixation for most biologically important elements including P, S, Cl, K, Fe, Cu, Zn and possibly Ca in adherent mammalian cells. Although cells rinsed with fresh media had a great deal of extracellular background signal for Cl and Ca, this approach maintained cells at the best possible physiological status before rapid freezing and it does not interfere with XFM analysis of other elements. If chemical fixation has to be chosen, the combination of 3% paraformaldehyde and 1.5 % glutaraldehyde preserves S, Fe, Cu and Zn better than either fixative alone. When chemically fixed cells were subjected to a variety of dehydration processes, air drying was proved to be more suitable than other drying methods such as graded ethanol dehydration and freeze drying. This first detailed comparison for x-ray fluorescence microscopy shows how detailed quantitative conclusions can be affected by the choice of cell preparation method.

Indexed as

AnimalsFibroblastsMiceMicroscopy, FluorescenceNIH 3T3 CellsSpectrometry, X-Ray EmissionTissue FixationTrace ElementsTrace ElementsBiologicalcryomicroscopyspecimen preparationx-ray microanalysisx-ray microscopy

Identifiers

PMID27580164
PMCPMC5217071
OpenAlexW2518292073

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.