Evidence map›Paper›PMID 27580005›Full record

ArticleBrazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica2016

Influence of storage time on DNA of Chlamydia trachomatis, Ureaplasma urealyticum, and Neisseria gonorrhoeae for accurate detection by quantitative real-time polymerase chain reaction.

Y Lu, C Z Rong, J Y Zhao, X J Lao, L Xie, S Li, X Qin

Open access · goldAbstract read
In one paragraph

Article in Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Y LuDepartment of Clinical Laboratory, First Affiliated Hospital, Guangxi Medical University, Nanning, Guangxi, China.
C Z RongDepartment of Clinical Laboratory, Children's Hospital, Maternal and Child Health Hospital, Guangxi Zhuang Autonomous Region, Nanning, Guangxi, China.
J Y ZhaoDepartment of Clinical Laboratory, Children's Hospital, Maternal and Child Health Hospital, Guangxi Zhuang Autonomous Region, Nanning, Guangxi, China.
X J LaoDepartment of Clinical Laboratory, First Affiliated Hospital, Guangxi Medical University, Nanning, Guangxi, China.
L XieDepartment of Clinical Laboratory, First Affiliated Hospital, Guangxi Medical University, Nanning, Guangxi, China.
S LiDepartment of Clinical Laboratory, First Affiliated Hospital, Guangxi Medical University, Nanning, Guangxi, China.
X QinDepartment of Clinical Laboratory, First Affiliated Hospital, Guangxi Medical University, Nanning, Guangxi, China.
Guangxi Medical University · CNFirst Affiliated Hospital of GuangXi Medical University · CNGuangxi Academy of Special Crops · CNGuangxi Maternal and Child Health Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The shipment and storage conditions of clinical samples pose a major challenge to the detection accuracy of Chlamydia trachomatis (CT), Neisseria gonorrhoeae (NG), and Ureaplasma urealyticum (UU) when using quantitative real-time polymerase chain reaction (qRT-PCR). The aim of the present study was to explore the influence of storage time at 4°C on the DNA of these pathogens and its effect on their detection by qRT-PCR. CT, NG, and UU positive genital swabs from 70 patients were collected, and DNA of all samples were extracted and divided into eight aliquots. One aliquot was immediately analyzed with qRT-PCR to assess the initial pathogen load, whereas the remaining samples were stored at 4°C and analyzed after 1, 2, 3, 7, 14, 21, and 28 days. No significant differences in CT, NG, and UU DNA loads were observed between baseline (day 0) and the subsequent time points (days 1, 2, 3, 7, 14, 21, and 28) in any of the 70 samples. Although a slight increase in DNA levels was observed at day 28 compared to day 0, paired sample t-test results revealed no significant differences between the mean DNA levels at different time points following storage at 4°C (all P>0.05). Overall, the CT, UU, and NG DNA loads from all genital swab samples were stable at 4°C over a 28-day period.

Indexed as

Specimen HandlingAdultBacterial LoadChlamydia trachomatisDNA, BacterialFemaleGenitaliaHumansMaleMiddle AgedNeisseria gonorrhoeaeReal-Time Polymerase Chain ReactionReference ValuesTime FactorsUreaplasma urealyticumYoung AdultDNA, Bacterial

Identifiers

PMID27580005
PMCPMC5007074
OpenAlexW2515829056

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.