Evidence map›Paper›PMID 27578962›Full record

ArticleEvolutionary bioinformatics online2016

Molecular Evolution of the Yersinia Major Outer Membrane Protein C (OmpC).

Anna M Stenkova, Evgeniya P Bystritskaya, Konstantin V Guzev, Alexander V Rakin, Marina P Isaeva

Open access · goldAbstract read
In one paragraph

Article in Evolutionary bioinformatics online, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Differential Expression ofMolecules (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Anna M StenkovaFar Eastern Federal University, Vladivostok, Russia.; Pacific Institute of Bioorganic Chemistry, Vladivostok, Russia.
Evgeniya P BystritskayaFar Eastern Federal University, Vladivostok, Russia.; Pacific Institute of Bioorganic Chemistry, Vladivostok, Russia.
Konstantin V GuzevPacific Institute of Bioorganic Chemistry, Vladivostok, Russia.
Alexander V RakinMax von Pettenkofer Institute for Hygiene and Clinical Microbiology, Ludwig Maximilian University, Munich, Germany.
Marina P IsaevaFar Eastern Federal University, Vladivostok, Russia.; Pacific Institute of Bioorganic Chemistry, Vladivostok, Russia.
Far Eastern Federal University · RUPacific Institute of Bioorganic Chemistry. GB Elyakova Far Eastern Branch of the Russian Academy of Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genus Yersinia includes species with a wide range of eukaryotic hosts (from fish, insects, and plants to mammals and humans). One of the major outer membrane proteins, the porin OmpC, is preferentially expressed in the host gut, where osmotic pressure, temperature, and the concentrations of nutrients and toxic products are relatively high. We consider here the molecular evolution and phylogeny of Yersinia ompC. The maximum likelihood gene tree reflects the macroevolution processes occurring within the genus Yersinia. Positive selection and horizontal gene transfer are the key factors of ompC diversification, and intraspecies recombination was revealed in two Yersinia species. The impact of recombination on ompC evolution was different from that of another major porin gene, ompF, possibly due to the emergence of additional functions and conservation of the basic transport function. The predicted antigenic determinants of OmpC were located in rapidly evolving regions, which may indicate the evolutionary mechanisms of Yersinia adaptation to the host immune system.

Indexed as

outer membranepathogen adaptationporinsrecombinationYersinia

Identifiers

PMID27578962
PMCPMC4993215
OpenAlexW2510994008

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.