Evidence map›Paper›PMID 27577169›Full record

SynthesisNature communications2016

Centromere and kinetochore gene misexpression predicts cancer patient survival and response to radiotherapy and chemotherapy.

Weiguo Zhang, Jian-Hua Mao, Wei Zhu, Anshu K Jain, Ke Liu, James B Brown, Gary H Karpen

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed
13.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed, 195 citations in OpenAlex.

  1. Trial
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  4. Review
  5. Determinants of centromeric nucleosome conformation.bioRxiv : the preprint server for biology · 2026
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66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Weiguo ZhangBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Mailstop 977, Berkeley, California 94720, USA.
Jian-Hua MaoBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Mailstop 977, Berkeley, California 94720, USA.
Wei ZhuDepartment of Translational Bioinformatics, Cellular Biomedicine Group, Inc., Level 5, Building 1, 333 Guiping Road, Shanghai 200233, the People's Republic of China.
Anshu K JainDepartment of Therapeutic Radiology, Yale School of Medicine, Yale University, New Haven, Connecticut 06510, USA.
Ke LiuEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Mailstop 977, Berkeley, California 94720, USA.
James B BrownEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Mailstop 977, Berkeley, California 94720, USA.
Gary H KarpenBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Mailstop 977, Berkeley, California 94720, USA.
Lawrence Berkeley National Laboratory · USUniversity of California, Berkeley · USHealth Biomed (China) · CNYale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Determinants of Centromere Identity in DrosophilaR01GM066272 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KARPEN, GARY H · 2004 to 2011
$3.4M
Regulation of Centromere Protein Stability and Impact on Cancer ProgressionR01GM119011 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KARPEN, GARY H · 2016 to 2019
$2.1M
The Role of Fbxw7 in genetic instability and cancerR01CA116481 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MAO, JIAN-HUA · 2008 to 2012
$1.7M
Nonparametric methods for functional and translational genomicsR00HG006698 · NHGRI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI BROWN, JAMES BENTLEY · 2014 to 2016
$747k
NCATS NIH HHS UL1 TR001863NCI NIH HHS R01 CA116481NHGRI NIH HHS R00 HG006698NIGMS NIH HHS R01 GM066272NIGMS NIH HHS R01 GM119011
6 · The paper itself

Abstract

Chromosomal instability (CIN) is a hallmark of cancer that contributes to tumour heterogeneity and other malignant properties. Aberrant centromere and kinetochore function causes CIN through chromosome missegregation, leading to aneuploidy, rearrangements and micronucleus formation. Here we develop a Centromere and kinetochore gene Expression Score (CES) signature that quantifies the centromere and kinetochore gene misexpression in cancers. High CES values correlate with increased levels of genomic instability and several specific adverse tumour properties, and prognosticate poor patient survival for breast and lung cancers, especially early-stage tumours. They also signify high levels of genomic instability that sensitize cancer cells to additional genotoxicity. Thus, the CES signature forecasts patient response to adjuvant chemotherapy or radiotherapy. Our results demonstrate the prognostic and predictive power of the CES, suggest a role for centromere misregulation in cancer progression, and support the idea that tumours with extremely high CIN are less tolerant to specific genotoxic therapies.

Indexed as

Gene Expression Regulation, NeoplasticBreastBreast NeoplasmsCentromereChemotherapy, AdjuvantChromosomal InstabilityDatasets as TopicFemaleGene Expression ProfilingHumansKaplan-Meier EstimateLungLung NeoplasmsNeoplasm StagingPrognosisRadiotherapy, Adjuvant

Identifiers

PMID27577169
PMCPMC5013662
OpenAlexW2514207328

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.