Evidence map›Paper›PMID 27576532›Full record

ArticleNucleic acids research2016

Chromatin recruitment of activated AMPK drives fasting response genes co-controlled by GR and PPARα.

Dariusz Ratman, Viacheslav Mylka, Nadia Bougarne, Michal Pawlak, Sandrine Caron, Nathalie Hennuyer, Réjane Paumelle, Lode De Cauwer, Jonathan Thommis, Mark H Rider and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 77 citations in OpenAlex.

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  15. Transcriptional control of energy metabolism by nuclear receptors.Nature reviews. Molecular cell biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Dariusz RatmanReceptor Research Laboratories, Nuclear Receptor Lab, Medical Biotechnology Center, VIB, 9000 Ghent, Belgium.
Viacheslav MylkaReceptor Research Laboratories, Nuclear Receptor Lab, Medical Biotechnology Center, VIB, 9000 Ghent, Belgium.
Nadia BougarneReceptor Research Laboratories, Nuclear Receptor Lab, Medical Biotechnology Center, VIB, 9000 Ghent, Belgium.
Michal PawlakUNIV LILLE, 59000 Lille, France.
Sandrine CaronUNIV LILLE, 59000 Lille, France.
Nathalie HennuyerUNIV LILLE, 59000 Lille, France.
Réjane PaumelleUNIV LILLE, 59000 Lille, France.
Lode De CauwerReceptor Research Laboratories, Nuclear Receptor Lab, Medical Biotechnology Center, VIB, 9000 Ghent, Belgium.
Jonathan ThommisReceptor Research Laboratories, Nuclear Receptor Lab, Medical Biotechnology Center, VIB, 9000 Ghent, Belgium.
Mark H Riderde Duve Institute and Université catholique de Louvain, 1200 Brussels, Belgium.
Claude LibertInflammation Research Center, VIB, 9052 Ghent, Belgium.
Sam LievensDepartment of Biochemistry, Ghent University, 9000 Ghent, Belgium.
Jan TavernierDepartment of Biochemistry, Ghent University, 9000 Ghent, Belgium.
Bart StaelsUNIV LILLE, 59000 Lille, France.
Karolien De BosscherReceptor Research Laboratories, Nuclear Receptor Lab, Medical Biotechnology Center, VIB, 9000 Ghent, Belgium karolien.debosscher@vib-ugent.be karolien.debosscher@ugent.be.
Ghent University · BEVIB-UGent Center for Medical Biotechnology · BEInserm · FRUniversité de Lille · FRde Duve Institute · BEInstitut Pasteur de Lille · FRVIB-UGent Center for Inflammation Research · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adaptation to fasting involves both Glucocorticoid Receptor (GRα) and Peroxisome Proliferator-Activated Receptor α (PPARα) activation. Given both receptors can physically interact we investigated the possibility of a genome-wide cross-talk between activated GR and PPARα, using ChIP- and RNA-seq in primary hepatocytes. Our data reveal extensive chromatin co-localization of both factors with cooperative induction of genes controlling lipid/glucose metabolism. Key GR/PPAR co-controlled genes switched from transcriptional antagonism to cooperativity when moving from short to prolonged hepatocyte fasting, a phenomenon coinciding with gene promoter recruitment of phosphorylated AMP-activated protein kinase (AMPK) and blocked by its pharmacological inhibition. In vitro interaction studies support trimeric complex formation between GR, PPARα and phospho-AMPK. Long-term fasting in mice showed enhanced phosphorylation of liver AMPK and GRα Ser211. Phospho-AMPK chromatin recruitment at liver target genes, observed upon prolonged fasting in mice, is dampened by refeeding. Taken together, our results identify phospho-AMPK as a molecular switch able to cooperate with nuclear receptors at the chromatin level and reveal a novel adaptation mechanism to prolonged fasting.

Indexed as

Adenylate KinaseAnimalsBase SequenceBinding SitesCells, CulturedChromatinEnhancer Elements, GeneticFastingHepatocytesLipid MetabolismMice, Inbred C57BLMice, KnockoutPPAR alphaProtein TransportReceptors, GlucocorticoidSequence Analysis, DNAAdenylate KinaseChromatinPPAR alphaReceptors, Glucocorticoid

Identifiers

PMID27576532
PMCPMC5159533
OpenAlexW2508091231

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.