Evidence map›Paper›PMID 27576189›Full record

ArticleNeurobiology of disease2016

Sex-specific hippocampal 5-hydroxymethylcytosine is disrupted in response to acute stress.

Ligia A Papale, Sisi Li, Andy Madrid, Qi Zhang, Li Chen, Pankaj Chopra, Peng Jin, Sündüz Keleş, Reid S Alisch

Open access · hybridAbstract read
In one paragraph

Article in Neurobiology of disease, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. Article
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  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. ThePharmacogenomics · 2019
    Review
  12. Article
  13. Exposure to 4100K fluorescent light elicits sex specific transcriptional responses in Xiphophorus maculatus skin.Comparative biochemistry and physiology. Toxicology & pharmacology : CBP · 2018
    Article
  14. "DNA Methylation signatures in panic disorder".Translational psychiatry · 2017
    Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Ligia A PapaleDepartment of Psychiatry, University of Wisconsin, Madison, WI, USA.
Sisi LiDepartment of Psychiatry, University of Wisconsin, Madison, WI, USA; Neuroscience Training Program, University of Wisconsin, Madison, WI, USA.
Andy MadridDepartment of Psychiatry, University of Wisconsin, Madison, WI, USA; Neuroscience Training Program, University of Wisconsin, Madison, WI, USA.
Qi ZhangDepartment of Statistics, University of Nebraska, Lincoln, NE, USA.
Li ChenDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA.
Pankaj ChopraDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA.
Peng JinDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA.
Sündüz KeleşDepartment of Statistics, Biostatistics, and Medical Informatics, University of Wisconsin, Madison, WI, USA.
Reid S AlischDepartment of Psychiatry, University of Wisconsin, Madison, WI, USA. Electronic address: alisch@wisc.edu.
University of Wisconsin–Madison · USEmory University · USUniversity of Nebraska–Lincoln · USUniversity of Wisconsin System · US

Funding

TrainingU54AI117924 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI CRAVEN, MARK W. · 2014 to 2018
$11.3M
Molecular Basis of rCGG-Mediated NeurodegenerationR01NS051630 · NINDS · EMORY UNIVERSITY · PI NELSON, DAVID LOREN · 2006 to 2023
$9.8M
NEUROSCIENCE TRAINING PROGRAMT32GM007507 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HALLORAN, MARY C · 1985 to 2017
$9.3M
Statistical Methods for the Analysis of ChlP-chip DataR01HG003747 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI KELES, SUNDUZ · 2007 to 2024
$4.8M
Tet-mediated Epigenetic Modulation in AutismR01MH102690 · NIMH · EMORY UNIVERSITY · PI JIN, PENG, WARREN, STEPHEN T. · 2014 to 2017
$2.6M
5-Hydroxymethylcytosine in NeurodevelopmentR01NS079625 · NINDS · EMORY UNIVERSITY · PI JIN, PENG · 2012 to 2016
$1.7M
Statistical Methods For Annotating Repetitive Genomic Regions Through ENCODE-deriU01HG007019 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI BRESNICK, EMERY H, DEWEY, COLIN NOEL · 2012 to 2015
$1.5M
NHGRI NIH HHS R01 HG003747NHGRI NIH HHS U01 HG007019NIAID NIH HHS U54 AI117924NIGMS NIH HHS T32 GM007507NIMH NIH HHS R01 MH102690NINDS NIH HHS R01 NS051630NINDS NIH HHS R01 NS079625
6 · The paper itself

Abstract

Environmental stress is among the most important contributors to increased susceptibility to develop psychiatric disorders. While it is well known that acute environmental stress alters gene expression, the molecular mechanisms underlying these changes remain largely unknown. 5-hydroxymethylcytosine (5hmC) is a novel environmentally sensitive epigenetic modification that is highly enriched in neurons and is associated with active neuronal transcription. Recently, we reported a genome-wide disruption of hippocampal 5hmC in male mice following acute stress that was correlated to altered transcript levels of genes in known stress related pathways. Since sex-specific endocrine mechanisms respond to environmental stimulus by altering the neuronal epigenome, we examined the genome-wide profile of hippocampal 5hmC in female mice following exposure to acute stress and identified 363 differentially hydroxymethylated regions (DhMRs) linked to known (e.g., Nr3c1 and Ntrk2) and potentially novel genes associated with stress response and psychiatric disorders. Integration of hippocampal expression data from the same female mice found stress-related hydroxymethylation correlated to altered transcript levels. Finally, characterization of stress-induced sex-specific 5hmC profiles in the hippocampus revealed 778 sex-specific acute stress-induced DhMRs some of which were correlated to altered transcript levels that produce sex-specific isoforms in response to stress. Together, the alterations in 5hmC presented here provide a possible molecular mechanism for the adaptive sex-specific response to stress that may augment the design of novel therapeutic agents that will have optimal effectiveness in each sex.

Indexed as

5-MethylcytosineAnimalsChromatin ImmunoprecipitationDisease Models, AnimalEpigenesis, GeneticFemaleGene OntologyHippocampusMaleMethylationMiceMice, Inbred C57BLSex FactorsStress, Psychological5-hydroxymethylcytosine5-Methylcytosine5-HydroxymethylcytosineAcute stressDNA methylationEpigeneticsGene expressionSex-specific

Identifiers

PMID27576189
PMCPMC5103857
OpenAlexW2517201667

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.