Evidence map›Paper›PMID 27575058›Full record

ArticlePLoS genetics2016

Competing for Iron: Duplication and Amplification of the isd Locus in Staphylococcus lugdunensis HKU09-01 Provides a Competitive Advantage to Overcome Nutritional Limitation.

Simon Heilbronner, Ian R Monk, Jeremy R Brozyna, David E Heinrichs, Eric P Skaar, Andreas Peschel, Timothy J Foster

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. The iron-regulated surface determinant B (IsdB) protein fromThe Journal of biological chemistry · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Frontiers in microbiology · 2019
    Article
  14. Article
  15. Article
  16. Review
  17. Tandem Amplification of the Staphylococcal Cassette ChromosomeAntimicrobial agents and chemotherapy · 2017
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 5 countries.

Simon HeilbronnerMicrobiology Department, Trinity College, Dublin, Ireland.
Ian R MonkMicrobiology Department, Trinity College, Dublin, Ireland.ORCID 0000-0001-6982-8074
Jeremy R BrozynaDepartment of Microbiology and Immunology, University of Western Ontario, London, Ontario, Canada.
David E HeinrichsDepartment of Microbiology and Immunology, University of Western Ontario, London, Ontario, Canada.
Eric P SkaarDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University School of Medicine and Tennessee Valley Healthcare Systems, US Department of Veterans Affairs, Nashville, Tennessee, United States of America.
Andreas PeschelInfection Biology, Interfaculty Institute of Microbiology and Infection Medicine, University of Tübingen, Tübingen, Germany.
Timothy J FosterMicrobiology Department, Trinity College, Dublin, Ireland.
Trinity College Dublin · IEWestern University · CAThe University of Melbourne · AUUniversity of Tübingen · DEVanderbilt University · US

Funding

Pathobiology of heme inducible transporters in Gram positive pathogensR01AI073843 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI SKAAR, ERIC P · 2009 to 2025
$5.9M
Mechanism and function of heme-iron utilization in staphylococcal pathogenesisR01AI069233 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI SKAAR, ERIC P · 2006 to 2020
$5.6M
Canadian Institutes of Health Research MOP-38002NIAID NIH HHS R01 AI069233NIAID NIH HHS R01 AI073843
6 · The paper itself

Abstract

Staphylococcus lugdunensis is a coagulase negative bacterial pathogen that is particularly associated with severe cases of infectious endocarditis. Unique amongst the coagulase-negative staphylococci, S. lugdunensis harbors an iron regulated surface determinant locus (isd). This locus facilitates the acquisition of heme as a source of nutrient iron during infection and allows iron limitation caused by "nutritional immunity" to be overcome. The isd locus is duplicated in S. lugdunensis HKU09-01 and we show here that the duplication is intrinsically unstable and undergoes accordion-like amplification and segregation leading to extensive isd copy number variation. Amplification of the locus increased the level of expression of Isd proteins and improved binding of hemoglobin to the cell surface of S. lugdunensis. Furthermore, Isd overexpression provided an advantage when strains were competing for a limited amount of hemoglobin as the sole source of iron. Gene duplications and amplifications (GDA) are events of fundamental importance for bacterial evolution and are frequently associated with antibiotic resistance in many species. As such, GDAs are regarded as evolutionary adaptions to novel selective pressures in hostile environments pointing towards a special importance of isd for S. lugdunensis. For the first time we show an example of a GDA that involves a virulence factor of a Gram-positive pathogen and link the GDA directly to a competitive advantage when the bacteria were struggling with selective pressures mimicking "nutritional immunity".

Indexed as

DNA Copy Number VariationsEndocarditis, BacterialGene DuplicationGenetic LociHemeHemoglobinsHumansIronIron-Regulatory ProteinsStaphylococcal InfectionsStaphylococcus lugdunensisSurface PropertiesHemeHemoglobinsIronIron-Regulatory Proteins

Identifiers

PMID27575058
PMCPMC5004866
OpenAlexW2516922090

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.