Evidence map›Paper›PMID 27574916›Full record

ArticleEnvironmental science & technology2016

Tris(1,3-dichloro-2-propyl)phosphate Induces Genome-Wide Hypomethylation within Early Zebrafish Embryos.

David C Volz, Jessica K Leet, Albert Chen, Heather M Stapleton, Neerja Katiyar, Rakesh Kaundal, Yang Yu, Yinsheng Wang

Abstract read
In one paragraph

Article in Environmental science & technology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 56 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

David C VolzDepartment of Environmental Sciences, University of California, Riverside , Riverside, California 92521, United States.
Jessica K LeetDepartment of Environmental Health Sciences, University of South Carolina , Columbia, South Carolina 29208, United States.
Albert ChenDivision of Environmental Sciences and Policy, Duke University , Durham, North Carolina 27708, United States.
Heather M StapletonDivision of Environmental Sciences and Policy, Duke University , Durham, North Carolina 27708, United States.
Neerja KatiyarBioinformatics Facility, Institute for Integrative Genome Biology, University of California, Riverside , Riverside, California 92521, United States.
Rakesh KaundalBioinformatics Facility, Institute for Integrative Genome Biology, University of California, Riverside , Riverside, California 92521, United States.
Yang YuDepartment of Chemistry, University of California, Riverside , Riverside, California 92521, United States.
Yinsheng WangDepartment of Chemistry, University of California, Riverside , Riverside, California 92521, United States.
University of California, Riverside · USDuke University · USUniversity of South Carolina · US

Funding

Enzymatic Conversions of Tet-mediated Oxidation Products of 5-MethylcytosineR21ES025392 · NIEHS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI WANG, YINSHENG · 2015 to 2016
$425k
DEVELOPMENTAL TOXICITY OF ORGANOPHOSPHATE-BASED FLAME RETARDANTSR21ES022797 · NIEHS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI VOLZ, DAVID C. · 2014 to 2015
$418k
NIEHS NIH HHS R21 ES022797NIEHS NIH HHS R21 ES025392
6 · The paper itself

Abstract

Tris(1,3-dichloro-2-propyl)phosphate (TDCIPP) is a high-production volume organophosphate-based plasticizer and flame retardant widely used within the United States. Using zebrafish as a model, the objectives of this study were to determine whether (1) TDCIPP inhibits DNA methyltransferase (DNMT) within embryonic nuclear extracts; (2) uptake of TDCIPP from 0.75 h postfertilization (hpf, 2-cell) to 2 hpf (64-cell) or 6 hpf (shield stage) leads to impacts on the early embryonic DNA methylome; and (3) TDCIPP-induced impacts on cytosine methylation are localized to CpG islands within intergenic regions. Within this study, 5-azacytidine (5-azaC, a DNMT inhibitor) was used as a positive control. Although 5-azaC significantly inhibited zebrafish DNMT, TDCIPP did not affect DNMT activity in vitro at concentrations as high as 500 μM. However, rapid embryonic uptake of 5-azaC and TDCIPP from 0.75 to 2 hpf resulted in chemical- and chromosome-specific alterations in cytosine methylation at 2 hpf. Moreover, TDCIPP exposure predominantly resulted in hypomethylation of positions outside of CpG islands and within intragenic (exon) regions of the zebrafish genome. Overall, these findings provide the foundation for monitoring DNA methylation dynamics within zebrafish as well as identifying potential associations among TDCIPP exposure, adverse health outcomes, and DNA methylation status within human populations.

Indexed as

OrganophosphatesZebrafishAnimalsDNA MethylationFlame RetardantsHumansOrganophosphorus CompoundsPhosphatesFlame RetardantsOrganophosphatesOrganophosphorus CompoundsPhosphatestris(1,3-dichloro-2-propyl)phosphate

Identifiers

PMID27574916
PMCPMC5080636
OpenAlexW2512529990

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.