Evidence map›Paper›PMID 27574300›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2016

The ATM Kinase Restrains Joining of Both VDJ Signal and Coding Ends.

Katheryn Meek, Yao Xu, Caleb Bailie, Kefei Yu, Jessica A Neal

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Do Molecular Profiles of PrimaryFrontiers in endocrinology · 2021
    Article
  3. Article
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Katheryn MeekDepartment of Microbiology and Molecular Genetics, College of Veterinary Medicine, Michigan State University, East Lansing, MI 48824; kmeek@msu.edu.
Yao XuDepartment of Microbiology and Molecular Genetics, College of Veterinary Medicine, Michigan State University, East Lansing, MI 48824.
Caleb BailieDepartment of Microbiology and Molecular Genetics, College of Veterinary Medicine, Michigan State University, East Lansing, MI 48824.
Kefei YuDepartment of Microbiology and Molecular Genetics, College of Human Medicine, Michigan State University, East Lansing, MI 48824.ORCID 0000-0002-3870-2812
Jessica A NealDepartment of Microbiology and Molecular Genetics, College of Veterinary Medicine, Michigan State University, East Lansing, MI 48824.
Michigan State University · US

Funding

Relevant Targets of the DNA Dependent Protein KinaseR01AI048758 · NIAID · MICHIGAN STATE UNIVERSITY · PI MEEK, KATHERYN D · 2000 to 2016
$5.2M
NIAID NIH HHS R01 AI048758
6 · The paper itself

Abstract

The evidence that ATM affects resolution of RAG-induced DNA double-strand breaks is profuse and unequivocal; moreover, it is clear that the RAG complex itself cooperates (in an undetermined way) with ATM to facilitate repair of these double-strand breaks by the classical nonhomologous end-joining pathway. The mechanistic basis for the cooperation between ATM and the RAG complex has not been defined, although proposed models invoke ATM and RAG2's C terminus in maintaining the RAG postcleavage complex. In this study, we show that ATM reduces the rate of both coding and signal joining in a robust episomal assay; we suggest that this is the result of increased stability of the postcleavage complex. ATM's ability to inhibit VDJ joining requires its enzymatic activity. The noncore C termini of both RAG1 and RAG2 are also required for ATM's capacity to limit signal (but not coding) joining. Moreover, potential phosphorylation targets within the C terminus of RAG2 are also required for ATM's capacity to limit signal joining. These data suggest a model whereby the RAG signal end complex is stabilized by phosphorylation of RAG2 by ATM.

Indexed as

Gene Rearrangement, B-LymphocyteAtaxia Telangiectasia Mutated ProteinsDNA-Binding ProteinsDNA Breaks, Double-StrandedHEK293 CellsHomeodomain ProteinsHumansMultiprotein ComplexesNuclear ProteinsOpen Reading FramesPhosphorylationPlasmidsProtein Sorting SignalsProtein StabilityRecombinational DNA RepairVDJ ExonsAtaxia Telangiectasia Mutated ProteinsDNA-Binding ProteinsHomeodomain ProteinsMultiprotein ComplexesNuclear ProteinsProtein Sorting SignalsRAG-1 proteinRAG2 protein, human

Identifiers

PMID27574300
PMCPMC5101155
OpenAlexW2517732697

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.