Evidence map›Paper›PMID 27574103›Full record

ArticleG3 (Bethesda, Md.)2016

Whole-Genome Sequencing and iPLEX MassARRAY Genotyping Map an EMS-Induced Mutation Affecting Cell Competition in Drosophila melanogaster.

Chang-Hyun Lee, Gerard Rimesso, David M Reynolds, Jinlu Cai, Nicholas E Baker

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
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  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Rapid detection ofFrontiers in microbiology · 2024
    Article
  9. Evaluation of nucleotide MALDI-TOF-MS for the identification ofFrontiers in cellular and infection microbiology · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Association between single nucleotide polymorphisms of tropoelastin gene and aortic dissection.Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2021
    Article
  19. Article
  20. Emerging mechanisms of cell competition.Nature reviews. Genetics · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Chang-Hyun LeeDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York 10461.
Gerard RimessoDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York 10461.
David M ReynoldsDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York 10461.
Jinlu CaiDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York 10461.
Nicholas E BakerDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York 10461 nicholas.baker@einstein.yu.edu.

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
Cell Competition in Development and HomeostasisR01GM104213 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI BAKER, NICHOLAS E · 2013 to 2022
$2.6M
Cell Competition: Genes That Drive Tissue ReplacementR21EY018910 · NEI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI BAKER, NICHOLAS E · 2008 to 2010
$530k
NCI NIH HHS P30 CA013330NEI NIH HHS R21 EY018910NIGMS NIH HHS R01 GM104213NIH HHS P40 OD018537
6 · The paper itself

Abstract

Cell competition, the conditional loss of viable genotypes only when surrounded by other cells, is a phenomenon observed in certain genetic mosaic conditions. We conducted a chemical mutagenesis and screen to recover new mutations that affect cell competition between wild-type and RpS3 heterozygous cells. Mutations were identified by whole-genome sequencing, making use of software tools that greatly facilitate the distinction between newly induced mutations and other sources of apparent sequence polymorphism, thereby reducing false-positive and false-negative identification rates. In addition, we utilized iPLEX MassARRAY for genotyping recombinant chromosomes. These approaches permitted the mapping of a new mutation affecting cell competition when only a single allele existed, with a phenotype assessed only in genetic mosaics, without the benefit of complementation with existing mutations, deletions, or duplications. These techniques expand the utility of chemical mutagenesis and whole-genome sequencing for mutant identification. We discuss mutations in the Atm and Xrp1 genes identified in this screen.

Indexed as

Chromosome MappingGenome, InsectGenotypeHigh-Throughput Nucleotide SequencingAllelesAnimalsAtaxia Telangiectasia Mutated ProteinsDNA RepairDrosophila melanogasterEthyl MethanesulfonateGenetic Association StudiesGenetic TestingMutagenesisMutationPhenotypeQuantitative Trait, HeritableAtaxia Telangiectasia Mutated ProteinsEthyl Methanesulfonatecell competitionDrosophila melanogasterFlybookiPLEX MassARRAYwhole-genome sequencingXrp1

Identifiers

PMID27574103
PMCPMC5068942

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.