Evidence map›Paper›PMID 27574101›Full record

ArticleNature communications2016

Cross-species identification of genomic drivers of squamous cell carcinoma development across preneoplastic intermediates.

Vida Chitsazzadeh, Cristian Coarfa, Jennifer A Drummond, Tri Nguyen, Aaron Joseph, Suneel Chilukuri, Elizabeth Charpiot, Charles H Adelmann, Grace Ching, Tran N Nguyen and 27 more

Abstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  16. Genetic evolution of keratinocytes to cutaneous squamous cell carcinoma.bioRxiv : the preprint server for biology · 2024
    Article
  17. Review
  18. Review
  19. Article
  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Vida ChitsazzadehDepartment of Translational Molecular Pathology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Cristian CoarfaDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
Jennifer A DrummondHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Tri NguyenNorthwest Diagnostic Clinic, Houston, Texas 77090, USA.
Aaron JosephSkin and Laser Surgery Associates, Pasadena, Texas 77505, USA.
Suneel ChilukuriBellaire Dermatology, Bellaire, Texas 77030, USA.
Elizabeth CharpiotBellaire Dermatology, Bellaire, Texas 77030, USA.
Charles H AdelmannDepartment of Translational Molecular Pathology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Grace ChingDepartment of Translational Molecular Pathology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Tran N NguyenDepartment of Translational Molecular Pathology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Courtney NicholasDepartment of Translational Molecular Pathology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Valencia D ThomasDepartment of Dermatology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Michael MigdenDepartment of Dermatology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Deborah MacFarlaneDepartment of Dermatology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Erika ThompsonSequencing and Microarray Facility, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Jianjun ShenNext Generation Sequencing Facility, Smithville, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Yoko TakataNext Generation Sequencing Facility, Smithville, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Kayla McNieceDepartment of Dermatology, University of Texas Medical School at Houston, Houston, Texas 77030, USA.
Maxim A PolanskyDepartment of Dermatology, University of Texas Medical School at Houston, Houston, Texas 77030, USA.
Hussein A AbbasDepartment of Biochemistry and Molecular Biology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Kimal RajapaksheDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
Adam GowerDepartment of Medicine, Boston University School of Medicine, Boston, Massachusetts 02215, USA.
Avrum SpiraDepartment of Medicine, Boston University School of Medicine, Boston, Massachusetts 02215, USA.
Kyle R CovingtonDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
Weimin XiaoDepartment of Biology and Biochemistry University of Houston, Houston, Texas 77204, USA.
Preethi GunaratneDepartment of Biology and Biochemistry University of Houston, Houston, Texas 77204, USA.
Curtis PickeringDepartment of Head &Neck Surgery, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Mitchell FrederickDepartment of Head &Neck Surgery, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Jeffrey N MyersDepartment of Head &Neck Surgery, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Li ShenDepartment of Bioinformatics &Computational Biology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Hui YaoDepartment of Bioinformatics &Computational Biology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Xiaoping SuDepartment of Bioinformatics &Computational Biology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Ronald P RapiniDepartment of Dermatology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
David A WheelerDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
Ernest T HawkDepartment of Clinical Cancer Prevention, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Elsa R FloresDepartment of Biochemistry and Molecular Biology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.
Kenneth Y TsaiDepartment of Translational Molecular Pathology, University of Texas MD Anderson Cancer Center Houston, Houston, Texas 77030, USA.

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Identification of non-coding RNAs to therapeutically target undruggable pathways in metastatic lung adenocarcinoma and squamous cell carcinomaR35CA197452 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI FLORES, ELSA R · 2016 to 2022
$6.4M
(PQA4) Molecularly Targeted Chemoprevention for Preneoplastic Squamous EpitheliaR01CA194617 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI TSAI, KENNETH Y · 2015 to 2018
$1.7M
NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA194617NCI NIH HHS R35 CA197452
6 · The paper itself

Abstract

Cutaneous squamous cell carcinoma (cuSCC) comprises 15-20% of all skin cancers, accounting for over 700,000 cases in USA annually. Most cuSCC arise in association with a distinct precancerous lesion, the actinic keratosis (AK). To identify potential targets for molecularly targeted chemoprevention, here we perform integrated cross-species genomic analysis of cuSCC development through the preneoplastic AK stage using matched human samples and a solar ultraviolet radiation-driven Hairless mouse model. We identify the major transcriptional drivers of this progression sequence, showing that the key genomic changes in cuSCC development occur in the normal skin to AK transition. Our data validate the use of this ultraviolet radiation-driven mouse cuSCC model for cross-species analysis and demonstrate that cuSCC bears deep molecular similarities to multiple carcinogen-driven SCCs from diverse sites, suggesting that cuSCC may serve as an effective, accessible model for multiple SCC types and that common treatment and prevention strategies may be feasible.

Indexed as

AnimalsAntineoplastic AgentsCarcinogenesisCarcinoma, Squamous CellDisease ProgressionDNA Mutational AnalysisExome SequencingFemaleGene Expression ProfilingGenomicsHigh-Throughput Nucleotide SequencingHumansKeratosis, ActinicMiceMice, HairlessMolecular Targeted TherapyAntineoplastic Agents

Identifiers

PMID27574101
PMCPMC5013636

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.