Evidence map›Paper›PMID 27573353›Full record

ArticleJournal of the American Chemical Society2016

Identification of Mechanism-Based Inactivation in P450-Catalyzed Cyclopropanation Facilitates Engineering of Improved Enzymes.

Hans Renata, Russell D Lewis, Michael J Sweredoski, Annie Moradian, Sonja Hess, Z Jane Wang, Frances H Arnold

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Enzymatic Stereodivergent Synthesis of Azaspiro[2.y]alkanes.Journal of the American Chemical Society · 2025
    Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. How Does Replacement of the Axial Histidine Ligand in CytochromeInternational journal of molecular sciences · 2020
    Article
  9. Article
  10. Stereoselective Bioreduction of α-diazo-β-keto Esters.Molecules (Basel, Switzerland) · 2020
    Article
  11. A de novo peroxidase is also a promiscuous yet stereoselective carbene transferase.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  12. Article
  13. Site-Selective Functionalization of (spAngewandte Chemie (International ed. in English) · 2019
    Review
  14. Engineered CytochromeSynlett : accounts and rapid communications in synthetic organic chemistry · 2019
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hans RenataDivision of Chemistry and Chemical Engineering, MC 210-41, and ‡Proteome Exploration Laboratory, Division of Biology and Biological Engineering, Beckman Institute, MC 139-74, California Institute of Technology , 1200 E California Blvd, Pasadena, California 91125, United States.
Russell D LewisDivision of Chemistry and Chemical Engineering, MC 210-41, and ‡Proteome Exploration Laboratory, Division of Biology and Biological Engineering, Beckman Institute, MC 139-74, California Institute of Technology , 1200 E California Blvd, Pasadena, California 91125, United States.
Michael J SweredoskiDivision of Chemistry and Chemical Engineering, MC 210-41, and ‡Proteome Exploration Laboratory, Division of Biology and Biological Engineering, Beckman Institute, MC 139-74, California Institute of Technology , 1200 E California Blvd, Pasadena, California 91125, United States.
Annie MoradianDivision of Chemistry and Chemical Engineering, MC 210-41, and ‡Proteome Exploration Laboratory, Division of Biology and Biological Engineering, Beckman Institute, MC 139-74, California Institute of Technology , 1200 E California Blvd, Pasadena, California 91125, United States.
Sonja HessDivision of Chemistry and Chemical Engineering, MC 210-41, and ‡Proteome Exploration Laboratory, Division of Biology and Biological Engineering, Beckman Institute, MC 139-74, California Institute of Technology , 1200 E California Blvd, Pasadena, California 91125, United States.
Z Jane WangDivision of Chemistry and Chemical Engineering, MC 210-41, and ‡Proteome Exploration Laboratory, Division of Biology and Biological Engineering, Beckman Institute, MC 139-74, California Institute of Technology , 1200 E California Blvd, Pasadena, California 91125, United States.
Frances H ArnoldDivision of Chemistry and Chemical Engineering, MC 210-41, and ‡Proteome Exploration Laboratory, Division of Biology and Biological Engineering, Beckman Institute, MC 139-74, California Institute of Technology , 1200 E California Blvd, Pasadena, California 91125, United States.

Funding

PREDOCTORAL TRAINING IN BIOLOGY AND CHEMISTRYT32GM007616 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1985 to 2019
$22.9M
NIGMS NIH HHS T32 GM007616
6 · The paper itself

Abstract

Following the recent discovery that heme proteins can catalyze the cyclopropanation of styrenyl olefins with high efficiency and selectivity, interest in developing new enzymes for a variety of non-natural carbene transfer reactions has burgeoned. The fact that diazo compounds and other carbene precursors are known mechanism-based inhibitors of P450s, however, led us to investigate if they also interfere with this new enzyme function. We present evidence for two inactivation pathways that are operative during cytochrome P450-catalyzed cyclopropanation. Using a combination of UV-vis, mass spectrometry, and proteomic analyses, we show that the heme cofactor and several nucleophilic side chains undergo covalent modification by ethyl diazoacetate (EDA). Substitution of two of the affected residues with less-nucleophilic amino acids led to a more than twofold improvement in cyclopropanation performance (total TTN). Elucidating the inactivation pathways of heme protein-based carbene transfer catalysts should aid in the optimization of this new biocatalytic function.

Indexed as

Amino Acid SequenceCatalysisCoenzymesCytochrome P-450 Enzyme InhibitorsCytochrome P-450 Enzyme SystemEscherichia coliHemeModels, MolecularMutagenesis, Site-DirectedProtein ConformationProtein EngineeringCoenzymesCytochrome P-450 Enzyme InhibitorsCytochrome P-450 Enzyme SystemHeme

Identifiers

PMID27573353
PMCPMC5042878

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.