Evidence map›Paper›PMID 27573109›Full record

ArticleNature microbiology2016

Endemic hydrothermal vent species identified in the open ocean seed bank.

Giorgio Gonnella, Stefanie Böhnke, Daniela Indenbirken, Dieter Garbe-Schönberg, Richard Seifert, Christian Mertens, Stefan Kurtz, Mirjam Perner

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 71 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Giorgio GonnellaCenter for Bioinformatics, University of Hamburg, Bundesstraße 43, 20146 Hamburg, Germany.
Stefanie BöhnkeMolecular Biology of Microbial Consortia, University of Hamburg, Biocenter Klein Flottbek, Ohnhorststraße 18, 22609 Hamburg, Germany.
Daniela IndenbirkenHeinrich-Pette-Institut, Leibniz Institute for Experimental Virology, Martinistraße 52, 20251 Hamburg, Germany.
Dieter Garbe-SchönbergInstitute of Geosciences, University of Kiel, Ludewig-Meyn-Straße 10, 24118 Kiel, Germany.
Richard SeifertInstitute for Geology, University of Hamburg, Bundesstraße 55, 20146 Hamburg, Germany.
Christian MertensInstitute of Environmental Physics, University Bremen, Otto-Hahn-Allee 1, 28359 Bremen, Germany.
Stefan KurtzCenter for Bioinformatics, University of Hamburg, Bundesstraße 43, 20146 Hamburg, Germany.
Mirjam PernerMolecular Biology of Microbial Consortia, University of Hamburg, Biocenter Klein Flottbek, Ohnhorststraße 18, 22609 Hamburg, Germany.
Universität Hamburg · DEKiel University · DELeibniz Institute of Virology (LIV) · DEUniversity of Bremen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hydrothermal vent systems host microbial communities among which several microorganisms have been considered endemic to this type of habitat. It is still unclear how these organisms colonize geographically distant hydrothermal environments. Based on 16S rRNA gene sequences, we compare the bacterial communities of sixteen Atlantic hydrothermal vent samples with our own and publicly available global open ocean samples. Analysing sequences obtained from 63 million 16S rRNA genes, the genera we could identify in the open ocean waters contained 99.9% of the vent reads. This suggests that previously observed vent exclusiveness is, in most cases, probably an artefact of lower sequencing depth. These findings are a further step towards elucidating the role of the open ocean as a seed bank. They can explain the predicament of how species expected to be endemic to vent systems are able to colonize geographically distant hydrothermal habitats and contribute to our understanding of whether 'everything is really everywhere'.

Indexed as

BiodiversityPhylogeographyAtlantic OceanBacteriaCluster AnalysisDNA, RibosomalHydrothermal VentsRNA, Ribosomal, 16SSequence Analysis, DNADNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID27573109
OpenAlexW2429811108

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.