Evidence map›Paper›PMID 27573016›Full record

ArticleJournal of bacteriology2016

Cho Endonuclease Functions during DNA Interstrand Cross-Link Repair in Escherichia coli.

Anthonige Vidya Perera, James Brian Mendenhall, Charmain Tan Courcelle, Justin Courcelle

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Bacterial DNA excision repair pathways.Nature reviews. Microbiology · 2022
    Review
  6. Review
  7. UvrC Coordinates an OJournal of the American Chemical Society · 2020
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Anthonige Vidya PereraDepartment of Biology, Portland State University, Portland, Oregon, USA.
James Brian MendenhallDepartment of Biology, Portland State University, Portland, Oregon, USA.
Charmain Tan CourcelleDepartment of Biology, Portland State University, Portland, Oregon, USA.
Justin CourcelleDepartment of Biology, Portland State University, Portland, Oregon, USA justc@pdx.edu.
Portland State University · US

Funding

Mechanism of DNA interstrand crosslink repair in vivoR15ES025953 · NIEHS · PORTLAND STATE UNIVERSITY · PI COURCELLE, JUSTIN · 2015 to 2015
$446k
NIEHS NIH HHS R15 ES025953
6 · The paper itself

Abstract

DNA interstrand cross-links are complex lesions that covalently link both strands of the duplex DNA. Lesion removal is proposed to be initiated via the UvrABC nucleotide excision repair complex; however, less is known about the subsequent steps of this complex repair pathway. In this study, we characterized the contribution of nucleotide excision repair mutants to survival in the presence of psoralen-induced damage. Unexpectedly, we observed that the nucleotide excision repair mutants exhibit differential sensitivity to psoralen-induced damage, with uvrC mutants being less sensitive than either uvrA or uvrB We show that Cho, an alternative endonuclease, acts with UvrAB and is responsible for the reduced hypersensitivity of uvrC mutants. We find that Cho's contribution to survival correlates with the presence of DNA interstrand cross-links, rather than monoadducts, and operates at a step after, or independently from, the initial incision during the global repair of psoralen DNA adducts from the genome. IMPORTANCE: DNA interstrand cross-links are complex lesions that covalently bind to both strands of the duplex DNA and whose mechanism of repair remains poorly understood. In this study, we show that Cho, an alternative endonuclease, acts with UvrAB and participates in the repair of DNA interstrand cross-links formed in the presence of photoactivated psoralens. Cho's contribution to survival correlates with the presence of DNA interstrand cross-links and operates at a step after, or independently from, the initial incision during the repair process.

Indexed as

DNA RepairAdenosine TriphosphatasesDNA AdductsDNA, BacterialDNA-Binding ProteinsDNA HelicasesEndodeoxyribonucleasesEscherichia coliEscherichia coli ProteinsFurocoumarinsSubstrate SpecificityAdenosine TriphosphatasesCho protein, E coliDNA AdductsDNA, BacterialDNA-Binding ProteinsDNA HelicasesEndodeoxyribonucleasesEscherichia coli ProteinsFurocoumarinspsoralen-DNA adductUvrA protein, E coliUvrB protein, E coliUvrC protein, E coli

Identifiers

PMID27573016
PMCPMC5075039
OpenAlexW2516679603

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.