Evidence map›Paper›PMID 27572973›Full record

ArticleNature microbiology2016

A global map of genetic diversity in Babesia microti reveals strong population structure and identifies variants associated with clinical relapse.

Jacob E Lemieux, Alice D Tran, Lisa Freimark, Stephen F Schaffner, Heidi Goethert, Kristian G Andersen, Suzane Bazner, Amy Li, Graham McGrath, Lynne Sloan and 7 more

Abstract read
In one paragraph

Article in Nature microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
9.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
  2. Tafenoquine: A Breakthrough Option for Babesiosis Treatment.Tropical medicine and infectious disease · 2026
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  8. Review
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  10. Antimicrobial agents and chemotherapy · 2024
    Article
  11. DoTropical medicine and infectious disease · 2024
    Article
  12. Tafenoquine for Relapsing Babesiosis: A Case Series.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2024
    Article
  13. Transfusion-transmittedJournal of clinical microbiology · 2023
    Review
  14. Article
  15. Review
  16. Open forum infectious diseases · 2023
    Article
  17. Advances inPathogens (Basel, Switzerland) · 2023
    Review
  18. Anti-parasitic drug discovery againstFrontiers in cellular and infection microbiology · 2023
    Article
  19. Article
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 1 country.

Jacob E LemieuxThe Broad Institute of MIT Division of Health Sciences and and MIT, Cambridge 02142, Massachusetts, USA.
Alice D TranProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Lisa FreimarkThe Broad Institute of MIT Division of Health Sciences and and MIT, Cambridge 02142, Massachusetts, USA.
Stephen F SchaffnerThe Broad Institute of MIT Division of Health Sciences and and MIT, Cambridge 02142, Massachusetts, USA.
Heidi GoethertTufts School of Veterinary Medicine, North Grafton, Massachusetts 01536, USA.
Kristian G AndersenThe Broad Institute of MIT Division of Health Sciences and and MIT, Cambridge 02142, Massachusetts, USA.
Suzane BaznerDepartment of Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Amy LiKoch Institute for Integrative Cancer Research at MIT, Cambridge, Massachusetts 02142, USA.
Graham McGrathDepartment of Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Lynne SloanDepartment of Pathology, The Mayo Clinic, Rochester, Minnesota 55905, USA.
Edouard VannierDivision of Geographic Medicine and Infectious Disease, Tufts Medical Center, Boston, Massachusetts 02111, USA.
Dan MilnerDepartment of Pathology, Brigham and Women's Hospital, Boston, Massachusetts 02115, USA.
Bobbi PrittDepartment of Pathology, The Mayo Clinic, Rochester, Minnesota 55905, USA.
Eric RosenbergDepartment of Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Sam TelfordTufts School of Veterinary Medicine, North Grafton, Massachusetts 01536, USA.
Jeffrey A BaileyProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Pardis C SabetiThe Broad Institute of MIT Division of Health Sciences and and MIT, Cambridge 02142, Massachusetts, USA.
Broad Institute · USMassachusetts General Hospital · USMayo Clinic · USNew England Disabled Sports · USUniversity of Massachusetts Chan Medical School · USBrigham and Women's Hospital · USMassachusetts Institute of Technology · USScripps Research Institute · USTufts Medical Center · US

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Searching for Persistence in Lyme DiseaseU01AI109656 · NIAID · TUFTS UNIVERSITY BOSTON · PI HU, LINDEN T · 2014 to 2018
$4.0M
Human copy number polymorphism and severe malariaR01AI099473 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BAILEY, JEFFREY A. · 2012 to 2015
$2.3M
Delivery system development for a reservoir targeted Lyme disease vaccineR41AI078631 · NIAID · FOODSOURCE LURE CORPORATION · PI HU, LINDEN T · 2008 to 2009
$600k
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI099473NIAID NIH HHS R41 AI078631NIAID NIH HHS U01 AI109656NIGMS NIH HHS T32 GM007753
6 · The paper itself

Abstract

Human babesiosis caused by Babesia microti is an emerging tick-borne zoonosis of increasing importance due to its rising incidence and expanding geographic range(1). Infection with this organism, an intraerythrocytic parasite of the phylum Apicomplexa, causes a febrile syndrome similar to malaria(2). Relapsing disease is common among immunocompromised and asplenic individuals(3,4) and drug resistance has recently been reported(5). To investigate the origin and genetic diversity of this parasite, we sequenced the complete genomes of 42 B. microti samples from around the world, including deep coverage of clinical infections at endemic sites in the continental USA. Samples from the continental USA segregate into a Northeast lineage and a Midwest lineage, with subsequent divergence of subpopulations along geographic lines. We identify parasite variants that associate with relapsing disease, including amino acid substitutions in the atovaquone-binding regions of cytochrome b (cytb) and the azithromycin-binding region of ribosomal protein subunit L4 (rpl4). Our results shed light on the origin, diversity and evolution of B. microti, suggest possible mechanisms for clinical relapse, and create the foundation for further research on this emerging pathogen.

Indexed as

Genetic VariationGenome, ProtozoanAmino Acid SubstitutionAnimalsAtovaquoneAzithromycinBabesia microtiBabesiosisCytochromes bHigh-Throughput Nucleotide SequencingHumansProtein BindingRecurrenceRibosomal ProteinsUnited StatesZoonosesAtovaquoneAzithromycinCytochromes bribosomal protein L4Ribosomal Proteins

Identifiers

PMID27572973
PMCPMC5563076
OpenAlexW2441043810

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.