ReviewMethods in enzymology2016
Databases and Archiving for CryoEM.
Review in Methods in enzymology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
21 citing papers in PubMed.
- EMinsight: a tool to capture cryoEM microscope configuration and experimental outcomes for analysis and deposition.Acta crystallographica. Section D, Structural biology · 2024Article
- Cryo-EM structure of the folded-back state of human β-cardiac myosin.Nature communications · 2023Article
- Cryo-EM structure of the folded-back state of human β-cardiac myosin.bioRxiv : the preprint server for biology · 2023Article
- Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future.Biophysical reviews · 2022Review
- New system for archiving integrative structures.Acta crystallographica. Section D, Structural biology · 2021Article
- Multi-body Refinement of Cryo-EM Images in RELION.Methods in molecular biology (Clifton, N.J.) · 2021Article
- Could Egg White Lysozyme be Solved by Single Particle Cryo-EM?Journal of chemical information and modeling · 2020Article
- Reporting on the future of integrative structural biology ORAU workshop.Frontiers in bioscience (Landmark edition) · 2020Article
- Evolving data standards for cryo-EM structures.Structural dynamics (Melville, N.Y.) · 2020Article
- Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.Structure (London, England : 1993) · 2019Article
- Reducing cryoEM file storage using lossy image formats.Journal of structural biology · 2019Article
- Archiving and disseminating integrative structure models.Journal of biomolecular NMR · 2019Article
- Using Scipion for stream image processing at Cryo-EM facilities.Journal of structural biology · 2018Article
- Comparing cryo-EM structures.Journal of structural biology · 2018Article
- Cryo-EM for Small Molecules Discovery, Design, Understanding, and Application.Cell chemical biology · 2018Review
- A call for public archives for biological image data.Nature methods · 2018Article
- Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules.Structure (London, England : 1993) · 2018Article
- Big data in cryoEM: automated collection, processing and accessibility of EM data.Current opinion in microbiology · 2018Review
- EMDB Web Resources.Current protocols in bioinformatics · 2018Article
- Trends in the Electron Microscopy Data Bank (EMDB).Acta crystallographica. Section D, Structural biology · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
CryoEM in structural biology is currently served by three public archives-EMDB for 3DEM reconstructions, PDB for models built from 3DEM reconstructions, and EMPIAR for the raw 2D image data used to obtain the 3DEM reconstructions. These archives play a vital role for both the structural community and the wider biological community in making the data accessible so that results may be reused, reassessed, and integrated with other structural and bioinformatics resources. The important role of the archives is underpinned by the fact that many journals mandate the deposition of data to PDB and EMDB on publication. The field is currently undergoing transformative changes where on the one hand high-resolution structures are becoming a routine occurrence while on the other hand electron tomography is enabling the study of macromolecules in the cellular context. Concomitantly the archives are evolving to best serve their stakeholder communities. In this chapter, we describe the current state of the archives, resources available for depositing, accessing, searching, visualizing and validating data, on-going community-wide initiatives and opportunities, and challenges for the future.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.