Evidence map›Paper›PMID 27572442›Full record

ArticleNature microbiology2016

Dynamics of the human and viral m(6)A RNA methylomes during HIV-1 infection of T cells.

Gianluigi Lichinchi, Shang Gao, Yogesh Saletore, Gwendolyn Michelle Gonzalez, Vikas Bansal, Yinsheng Wang, Christopher E Mason, Tariq M Rana

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 321 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
321citing papers in PubMed, 1 pooled it
23.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

321 citing papers in PubMed, 1 synthesis or guideline pooled it, 464 citations in OpenAlex.

  1. Pooled it
  2. RNA NPlant cell reports · 2026
    Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. m6A epigenetic modification of viral RNA is critical for the transmission cycle of mosquito-borne flaviviruses.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  8. Elevated mBMC cancer · 2026
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  11. The expanding role of mAdvanced biotechnology · 2026
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  12. Article
  13. Article
  14. Comprehensive analysis and validation of mBMC veterinary research · 2026
    Article
  15. Article
  16. Multidimensional mechanisms of SFTSV-host interactions: viral protein functions, mFrontiers in cellular and infection microbiology · 2026
    Review
  17. High-resolution HIV-1 mNAR genomics and bioinformatics · 2025
    Article
  18. Influenza NS1 drives NEmerging microbes & infections · 2025
    Article
  19. Single-base mJournal of virology · 2025
    Article
  20. Article

261 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Gianluigi LichinchiDepartment of Pediatrics, University of California, San Diego School of Medicine, La Jolla, California 92093, USA.
Shang GaoDepartment of Pediatrics, University of California, San Diego School of Medicine, La Jolla, California 92093, USA.
Yogesh SaletoreDepartment of Physiology and Biophysics and the Institute for Computational Biomedicine, Weill Cornell Medical College of Cornell University, 1305 York Avenue, New York, New York 10021, USA.
Gwendolyn Michelle GonzalezEnvironmental Toxicology Graduate Program and Department of Chemistry, University of California, Riverside, California 92521, USA.ORCID http://orcid.org/0000-0002-9884-6316
Vikas BansalDepartment of Pediatrics, University of California, San Diego School of Medicine, La Jolla, California 92093, USA.
Yinsheng WangEnvironmental Toxicology Graduate Program and Department of Chemistry, University of California, Riverside, California 92521, USA.
Christopher E MasonDepartment of Physiology and Biophysics and the Institute for Computational Biomedicine, Weill Cornell Medical College of Cornell University, 1305 York Avenue, New York, New York 10021, USA.
Tariq M RanaDepartment of Pediatrics, University of California, San Diego School of Medicine, La Jolla, California 92093, USA.
Cornell University · USUniversity of California, Riverside · USUniversity of California San Diego · USDiscovery Institute · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

Mechanisms of innate immunity against HIVR01AI043198 · NIAID · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI RANA, TARIQ M · 1998 to 2014
$4.7M
Modeling HIV/AIDS Associated Neurological Disorders with Human Pluripotent CellsDP1DA039562 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RANA, TARIQ M · 2015 to 2020
$3.9M
Regulation of HIV-1 Replication by Cellular IncRNAsR21AI125103 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RANA, TARIQ M · 2016 to 2017
$426k
NIAID NIH HHS R01 AI043198NIAID NIH HHS R21 AI125103NIDA NIH HHS DP1 DA039562
6 · The paper itself

Abstract

N(6)-methyladenosine (m(6)A) is the most prevalent internal modification of eukaryotic mRNA. Very little is known of the function of m(6)A in the immune system or its role in host-pathogen interactions. Here, we investigate the topology, dynamics and bidirectional influences of the viral-host RNA methylomes during HIV-1 infection of human CD4 T cells. We show that viral infection triggers a massive increase in m(6)A in both host and viral mRNAs. In HIV-1 mRNA, we identified 14 methylation peaks in coding and noncoding regions, splicing junctions and splicing regulatory sequences. We also identified a set of 56 human gene transcripts that were uniquely methylated in HIV-1-infected T cells and were enriched for functions in viral gene expression. The functional relevance of m(6)A for viral replication was demonstrated by silencing of the m(6)A writer or the eraser enzymes, which decreased or increased HIV-1 replication, respectively. Furthermore, methylation of two conserved adenosines in the stem loop II region of HIV-1 Rev response element (RRE) RNA enhanced binding of HIV-1 Rev protein to the RRE in vivo and influenced nuclear export of RNA. Our results identify a new mechanism for the control of HIV-1 replication and its interaction with the host immune system.

Indexed as

Host-Pathogen InteractionsAdenosineCD4-Positive T-LymphocytesCell LineHIV-1HumansRNA, MessengerAdenosineN-methyladenosineRNA, Messenger

Identifiers

PMID27572442
PMCPMC6053355
OpenAlexW2327216023

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.