Evidence map›Paper›PMID 27571750›Full record

ArticleNature microbiology2016

Crystal structure of Clostridium difficile toxin A.

Nicole M Chumbler, Stacey A Rutherford, Zhifen Zhang, Melissa A Farrow, John P Lisher, Erik Farquhar, David P Giedroc, Benjamin W Spiller, Roman A Melnyk, D Borden Lacy

Abstract read
In one paragraph

Article in Nature microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

  1. Article
  2. Mouse monoclonal antibodies againstInfection and immunity · 2025
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  3. Review
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  5. Allosterically switchable network orientsProceedings of the National Academy of Sciences of the United States of America · 2025
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  7. Mechanisms ofFrontiers in cellular and infection microbiology · 2025
    Review
  8. Article
  9. Article
  10. Tyrosine-modifying glycosylation by Yersinia effectors.The Journal of biological chemistry · 2024
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Design of 8-mer Peptides that BlockbioRxiv : the preprint server for biology · 2023
    Article
  17. Rapid visualization ofFrontiers in microbiology · 2023
    Article
  18. Structure-guided design of a potentFrontiers in microbiology · 2023
    Article
  19. Article
  20. Structure and conformational dynamics ofLife science alliance · 2022
    Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nicole M ChumblerChemical and Physical Biology Program, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Stacey A RutherfordDepartment of Pathology, Microbiology and Immunology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Zhifen ZhangDepartment of Biochemistry, University of Toronto and the Molecular Structure &Function Research Institute at The Hospital for Sick Children, Toronto, Ontario M5S 1A8, Canada.
Melissa A FarrowDepartment of Pathology, Microbiology and Immunology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
John P LisherInterdisciplinary Graduate Program in Biochemistry, Indiana University, Bloomington, Indiana 47405, USA.
Erik FarquharCase Western Reserve University Center for Synchrotron Biosciences, National Synchrotron Light Source, Building 725, Brookhaven National Laboratory, New York 11973, USA.
David P GiedrocDepartment of Chemistry, Indiana University, Bloomington, Indiana 47405, USA.
Benjamin W SpillerChemical and Physical Biology Program, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Roman A MelnykDepartment of Biochemistry, University of Toronto and the Molecular Structure &Function Research Institute at The Hospital for Sick Children, Toronto, Ontario M5S 1A8, Canada.
D Borden LacyChemical and Physical Biology Program, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Chemistry-Biology Interface Training GrantT32GM065086 · NIGMS · VANDERBILT UNIVERSITY · PI BACHMANN, BRIAN O, SULIKOWSKI, GARY ALLEN · 2002 to 2022
$7.0M
ZINC COORDINATION AND REGULATION OF ZINC METALLOPROTEINSR01GM042569 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI GIEDROC, DAVID P. · 1996 to 2015
$4.9M
Structural mechanisms of Clostridium difficile pathogenesisR01AI095755 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI LACY, DANA BORDEN · 2011 to 2020
$3.9M
The role of toxins in Clostridium difficile infection pathogenesisI01BX002943 · VA · VETERANS HEALTH ADMINISTRATION · PI LACY, DANA BORDEN · 2016 to 2025
–
NIAID NIH HHS R01 AI095755NIBIB NIH HHS P30 EB009998NIGMS NIH HHS R01 GM042569
6 · The paper itself

Abstract

Clostridium difficile infection is the leading cause of hospital-acquired diarrhoea and pseudomembranous colitis. Disease is mediated by the actions of two toxins, TcdA and TcdB, which cause the diarrhoea, as well as inflammation and necrosis within the colon. The toxins are large (308 and 270 kDa, respectively), homologous (47% amino acid identity) glucosyltransferases that target small GTPases within the host. The multidomain toxins enter cells by receptor-mediated endocytosis and, upon exposure to the low pH of the endosome, insert into and deliver two enzymatic domains across the membrane. Eukaryotic inositol-hexakisphosphate (InsP6) binds an autoprocessing domain to activate a proteolysis event that releases the N-terminal glucosyltransferase domain into the cytosol. Here, we report the crystal structure of a 1,832-amino-acid fragment of TcdA (TcdA1832), which reveals a requirement for zinc in the mechanism of toxin autoprocessing and an extended delivery domain that serves as a scaffold for the hydrophobic α-helices involved in pH-dependent pore formation. A surface loop of the delivery domain whose sequence is strictly conserved among all large clostridial toxins is shown to be functionally important, and is highlighted for future efforts in the development of vaccines and novel therapeutics.

Indexed as

Bacterial ToxinsCoenzymesCrystallography, X-RayEnterotoxinsModels, MolecularProtein BindingProtein ConformationZincBacterial ToxinsCoenzymesEnterotoxinstcdA protein, Clostridium difficileZinc

Identifiers

PMID27571750
PMCPMC4976693

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.