ArticleFrontiers in plant science2016
Origination, Expansion, Evolutionary Trajectory, and Expression Bias of AP2/ERF Superfamily in Brassica napus.
Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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25 citing papers in PubMed.
- Genome-Wide Characterization of theLife (Basel, Switzerland) · 2026Article
- Genome- and Transcriptome-Wide Characterization of AP2/ERF Transcription Factor Superfamily Reveals Their Relevance inPlants (Basel, Switzerland) · 2026Article
- Analysis of the TIL gene family in Brassicaceae species and functional study ofFrontiers in plant science · 2026Article
- Identification and characterization of the Quinoa AP2/ERF gene family and their expression patterns in response to salt stress.Scientific reports · 2024Article
- Large-scale analysis of the ARF and Aux/IAA gene families in 406 horticultural and other plants.Molecular horticulture · 2024Article
- Whole-genome and dispersed duplication, including transposed duplication, jointly advance the evolution of TLP genes in seven representative Poaceae lineages.BMC genomics · 2023Article
- Genome-Wide Identification ofInternational journal of molecular sciences · 2022Article
- Evolution of the DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN subfamily in green plants.Plant physiology · 2022Article
- Genome-wide investigation ofFrontiers in plant science · 2022Article
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- Comprehensive analysis of SSRs and database construction using all complete gene-coding sequences in major horticultural and representative plants.Horticulture research · 2021Article
- AP2/ERF and R2R3-MYB family transcription factors: potential associations between temperature stress and lipid metabolism in Auxenochlorella protothecoides.Biotechnology for biofuels · 2021Article
- Article
- Comprehensive identification and characterization of simple sequence repeats based on the whole-genome sequences of 14 forest and fruit trees.Forestry research · 2021Article
- Genome-wide analysis of AP2/ERF transcription factors family inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- Identification, evolution and expression analyses of whole genome-wide TLP gene family in Brassica napus.BMC genomics · 2020Article
- Genome-Wide Analysis of Phosphorus Transporter Genes inInternational journal of molecular sciences · 2020Article
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- Article
- Genome-wide exploration and characterization of miR172/euAP2 genes in Brassica napus L. for likely role in flower organ development.BMC plant biology · 2019Article
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12 authors.
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No grant is acknowledged in the PubMed record.
Abstract
The AP2/ERF superfamily, one of the most important transcription factor families, plays crucial roles in response to biotic and abiotic stresses. So far, a comprehensive evolutionary inference of its origination and expansion has not been available. Here, we identified 515 AP2/ERF genes in B. napus, a neo-tetraploid forming ~7500 years ago, and found that 82.14% of them were duplicated in the tetraploidization. A prominent subgenome bias was revealed in gene expression, tissue-specific, and gene conversion. Moreover, a large-scale analysis across plants and alga suggested that this superfamily could have been originated from AP2 family, expanding to form other families (ERF, and RAV). This process was accompanied by duplicating and/or alternative deleting AP2 domain, intragenic domain sequence conversion, and/or by acquiring other domains, resulting in copy number variations, alternatively contributing to functional innovation. We found that significant positive selection occurred at certain critical nodes during the evolution of land plants, possibly responding to changing environment. In conclusion, the present research revealed origination, functional innovation, and evolutionary trajectory of the AP2/ERF superfamily, contributing to understanding their roles in plant stress tolerance.
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