Evidence map›Paper›PMID 27568375›Full record

ArticleRice (New York, N.Y.)2016

Parental Genome Imbalance Causes Post-Zygotic Seed Lethality and Deregulates Imprinting in Rice.

Hong-Yu Zhang, Ming Luo, Susan D Johnson, Xiao-Wei Zhu, Lei Liu, Fang Huang, Yu-Tong Liu, Pei-Zhou Xu, Xian-Jun Wu

Open access · goldAbstract read
In one paragraph

Article in Rice (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Genetic and environmental manipulation ofFrontiers in plant science · 2023
    Article
  6. Review
  7. Article
  8. Plants (Basel, Switzerland) · 2021
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Hong-Yu ZhangRice Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, People's Republic of China.
Ming LuoCommonwealth Scientific and Industrial Research Organization (CSIRO), Agriculture Flagship, PO Box 1600, Canberra, 2601, ACT, Australia. ming.luo@csiro.au.
Susan D JohnsonCommonwealth Scientific and Industrial Research Organization (CSIRO), Agriculture Flagship, Waite Campus, PMB 2, Glen Osmond, SA, 5064, Australia.
Xiao-Wei ZhuRice Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, People's Republic of China.
Lei LiuRice Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, People's Republic of China.
Fang HuangRice Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, People's Republic of China.
Yu-Tong LiuRice Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, People's Republic of China.
Pei-Zhou XuRice Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, People's Republic of China.
Xian-Jun WuRice Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, People's Republic of China. wuxjsau@126.com.
Sichuan Agricultural University · CNCommonwealth Scientific and Industrial Research Organisation · AURice Research Institute · CNInstitute of Genetics and Developmental Biology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundReproductive isolation between rice of different ploidy levels is manifested as endosperm and embryo abortion in seeds produced by interploidy crosses. Genomic imprinting is considered to be the underlying mechanism establishing the post-zygotic hybridization barrier. We characterized disrupted seed development in reciprocal crosses between a diploid Japonica rice and a tetraploid Indica rice.

resultsTriploid seeds from these crosses had aborted development and could not germinate in soil but could be rescued in culture medium with significantly more seeds developing to seedlings in the 4n × 2n (♀-♂) cross with excess maternal genomes than in the 2n × 4n cross with excess paternal genome. Consistent with previous findings, precocious endosperm cellularization and bigger embryos were observed in the seeds from the maternal excess cross, whereas absence of cellularization and arrested globular embryos were found in the seeds from the paternal excess cross, supporting the idea that endosperm cellularization is an important transition for embryo development. Moreover, we found that starch granules were persistently deposited in the pericarp parenchyma cells of the paternal excess cross, while pericarp starch gradually decreased and relocated to the developing endosperm in balanced and maternal excess crosses in which cellularization and starch deposition occur in endosperm, suggesting that parental genome balance influences pericarp starch relocation via cellularization and starch deposition. Loss of imprinting, or altered expression of imprinted genes and epigenetic regulators, OsFIE2 and OsMET1b were observed, implying the potential role of imprinting and epigenetic mechanisms in regulating the differential parental genome dosage effects on endosperm development.

conclusionsOur results support the hypothesis that the maternal genome dosage promotes endosperm cellularization and the paternal genome dosage delays or inhibits cellularization via contributing different sets of imprinted genes.

Indexed as

CellularizationDNA methylationEmbryoEndospermImprintingPolycombPolyploidReproductionTriploid block

Identifiers

PMID27568375
PMCPMC5002275
OpenAlexW2512620908

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.