Evidence map›Paper›PMID 27566165›Full record

ArticlePlant physiology2016

A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis.

Zheng Li, Nooshin Omranian, Lutz Neumetzler, Ting Wang, Thomas Herter, Bjoern Usadel, Taku Demura, Patrick Giavalisco, Zoran Nikoloski, Staffan Persson

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

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  15. Overexpression ofInternational journal of molecular sciences · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Zheng LiSchool of BioSciences (Z.L., S.P.) and Australian Research Council Centre of Excellence in Plant Cell Walls (S.P.), University of Melbourne, Parkville, Victoria 3010, Australia;Max-Planck-Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (Z.L., N.O., L.N., T.W., T.H., P.G., Z.N., S.P.);Institute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen University, 52056 Aachen, Germany (B.U.); andGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.D.).ORCID 0000-0002-2004-8349
Nooshin OmranianSchool of BioSciences (Z.L., S.P.) and Australian Research Council Centre of Excellence in Plant Cell Walls (S.P.), University of Melbourne, Parkville, Victoria 3010, Australia;Max-Planck-Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (Z.L., N.O., L.N., T.W., T.H., P.G., Z.N., S.P.);Institute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen University, 52056 Aachen, Germany (B.U.); andGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.D.).ORCID 0000-0001-5548-4338
Lutz NeumetzlerSchool of BioSciences (Z.L., S.P.) and Australian Research Council Centre of Excellence in Plant Cell Walls (S.P.), University of Melbourne, Parkville, Victoria 3010, Australia;Max-Planck-Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (Z.L., N.O., L.N., T.W., T.H., P.G., Z.N., S.P.);Institute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen University, 52056 Aachen, Germany (B.U.); andGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.D.).ORCID 0000-0002-6946-567X
Ting WangSchool of BioSciences (Z.L., S.P.) and Australian Research Council Centre of Excellence in Plant Cell Walls (S.P.), University of Melbourne, Parkville, Victoria 3010, Australia;Max-Planck-Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (Z.L., N.O., L.N., T.W., T.H., P.G., Z.N., S.P.);Institute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen University, 52056 Aachen, Germany (B.U.); andGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.D.).ORCID 0000-0002-6845-600X
Thomas HerterSchool of BioSciences (Z.L., S.P.) and Australian Research Council Centre of Excellence in Plant Cell Walls (S.P.), University of Melbourne, Parkville, Victoria 3010, Australia;Max-Planck-Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (Z.L., N.O., L.N., T.W., T.H., P.G., Z.N., S.P.);Institute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen University, 52056 Aachen, Germany (B.U.); andGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.D.).
Bjoern UsadelSchool of BioSciences (Z.L., S.P.) and Australian Research Council Centre of Excellence in Plant Cell Walls (S.P.), University of Melbourne, Parkville, Victoria 3010, Australia;Max-Planck-Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (Z.L., N.O., L.N., T.W., T.H., P.G., Z.N., S.P.);Institute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen University, 52056 Aachen, Germany (B.U.); andGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.D.).
Taku DemuraSchool of BioSciences (Z.L., S.P.) and Australian Research Council Centre of Excellence in Plant Cell Walls (S.P.), University of Melbourne, Parkville, Victoria 3010, Australia;Max-Planck-Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (Z.L., N.O., L.N., T.W., T.H., P.G., Z.N., S.P.);Institute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen University, 52056 Aachen, Germany (B.U.); andGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.D.).
Patrick GiavaliscoSchool of BioSciences (Z.L., S.P.) and Australian Research Council Centre of Excellence in Plant Cell Walls (S.P.), University of Melbourne, Parkville, Victoria 3010, Australia;Max-Planck-Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (Z.L., N.O., L.N., T.W., T.H., P.G., Z.N., S.P.);Institute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen University, 52056 Aachen, Germany (B.U.); andGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.D.).ORCID 0000-0002-4636-1827
Zoran NikoloskiSchool of BioSciences (Z.L., S.P.) and Australian Research Council Centre of Excellence in Plant Cell Walls (S.P.), University of Melbourne, Parkville, Victoria 3010, Australia;Max-Planck-Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (Z.L., N.O., L.N., T.W., T.H., P.G., Z.N., S.P.);Institute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen University, 52056 Aachen, Germany (B.U.); andGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.D.).ORCID 0000-0003-2671-6763
Staffan PerssonSchool of BioSciences (Z.L., S.P.) and Australian Research Council Centre of Excellence in Plant Cell Walls (S.P.), University of Melbourne, Parkville, Victoria 3010, Australia;Max-Planck-Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (Z.L., N.O., L.N., T.W., T.H., P.G., Z.N., S.P.);Institute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen University, 52056 Aachen, Germany (B.U.); andGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.D.) staffan.persson@unimelb.edu.au.ORCID 0000-0002-6377-5132

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant cell walls are essential for plant growth and development. The cell walls are traditionally divided into primary walls, which surround growing cells, and secondary walls, which provide structural support to certain cell types and promote their functions. While much information is available about the enzymes and components that contribute to the production of these two types of walls, much less is known about the transition from primary to secondary wall synthesis. To address this question, we made use of a transcription factor system in Arabidopsis (Arabidopsis thaliana) in which an overexpressed master secondary wall-inducing transcription factor, VASCULAR-RELATED NAC DOMAIN PROTEIN7, can be redirected into the nucleus by the addition of dexamethasone. We established the time frame during which primary wall synthesis changed into secondary wall production in dexamethasone-treated seedlings and measured transcript and metabolite abundance at eight time points after induction. Using cluster- and network-based analyses, we integrated the data sets to explore coordination between transcripts, metabolites, and the combination of the two across the time points. We provide the raw data as well as a range of network-based analyses. These data reveal links between hormone signaling and metabolic processes during the formation of secondary walls and provide a framework toward a deeper understanding of how primary walls transition into secondary walls.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsCell NucleusCell WallChromatography, LiquidDexamethasoneGene Expression ProfilingGene OntologyMetabolic Networks and PathwaysMetabolomicsPhotosynthesisProtein TransportReverse Transcriptase Polymerase Chain ReactionSeedlingsTandem Mass SpectrometryArabidopsis ProteinsDexamethasoneTranscription FactorsVND7 protein, Arabidopsis

Identifiers

PMID27566165
PMCPMC5047112

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.