Evidence map›Paper›PMID 27565620›Full record

ArticleApplied and environmental microbiology2016

Orenia metallireducens sp. nov. Strain Z6, a Novel Metal-Reducing Member of the Phylum Firmicutes from the Deep Subsurface.

Yiran Dong, Robert A Sanford, Maxim I Boyanov, Kenneth M Kemner, Theodore M Flynn, Edward J O'Loughlin, Yun-Juan Chang, Randall A Locke, Joseph R Weber, Sheila M Egan and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 32 citations in OpenAlex.

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  11. Frontiers in microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Yiran DongCarl R. Woese Institute for Genomic Biology, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA Department of Geology, University of Illinois, Urbana-Champaign, Champaign, Illinois, USA Energy Biosciences Institute, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA dong5600@illinois.edu.
Robert A SanfordDepartment of Geology, University of Illinois, Urbana-Champaign, Champaign, Illinois, USA.
Maxim I BoyanovBiosciences Division, Argonne National Laboratory, Lemont, Illinois, USA Institute of Chemical Engineering, Bulgarian Academy of Sciences, Sofia, Bulgaria.
Kenneth M KemnerBiosciences Division, Argonne National Laboratory, Lemont, Illinois, USA.
Theodore M FlynnBiosciences Division, Argonne National Laboratory, Lemont, Illinois, USA.ORCID 0000-0002-1838-8942
Edward J O'LoughlinBiosciences Division, Argonne National Laboratory, Lemont, Illinois, USA.
Yun-Juan ChangCarl R. Woese Institute for Genomic Biology, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA High Performance and Research Computing, Office of Information Technology, Rutgers University, New Brunswick, New Jersey, USA.
Randall A LockeIllinois State Geology Survey, University of Illinois, Urbana-Champaign, Champaign, Illinois, USA.
Joseph R WeberDepartment of Microbiology, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA.
Sheila M EganDepartment of Biochemistry, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA.
Roderick I MackieCarl R. Woese Institute for Genomic Biology, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA Energy Biosciences Institute, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA Department of Animal Sciences, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA.
Isaac CannCarl R. Woese Institute for Genomic Biology, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA Energy Biosciences Institute, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA Department of Biochemistry, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA Department of Animal Sciences, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA.
Bruce W FoukeCarl R. Woese Institute for Genomic Biology, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA Department of Geology, University of Illinois, Urbana-Champaign, Champaign, Illinois, USA Energy Biosciences Institute, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA Department of Microbiology, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA Department of Animal Sciences, University of Illinois, Urbana-Champaign, Urbana, Illinois, USA.
University of Illinois Urbana-Champaign · USArgonne National Laboratory · USRutgers, The State University of New Jersey · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel halophilic and metal-reducing bacterium, Orenia metallireducens strain Z6, was isolated from briny groundwater extracted from a 2.02 km-deep borehole in the Illinois Basin, IL. This organism shared 96% 16S rRNA gene similarity with Orenia marismortui but demonstrated physiological properties previously unknown for this genus. In addition to exhibiting a fermentative metabolism typical of the genus Orenia, strain Z6 reduces various metal oxides [Fe(III), Mn(IV), Co(III), and Cr(VI)], using H IMPORTANCE: A novel iron-reducing species, Orenia metallireducens sp. nov., strain Z6, was isolated from groundwater collected from a geological formation located 2.02 km below land surface in the Illinois Basin, USA. Phylogenetic, physiologic, and genomic analyses of strain Z6 found it to have unique properties for iron reducers, including (i) active microbial iron-reducing capacity under broad ranges of temperatures (20 to 60°C), pHs (6 to 9.6), and salinities (0.4 to 3.5 M NaCl), (ii) lack of c-type cytochromes typically affiliated with iron reduction in Geobacter and Shewanella species, and (iii) being the only member of the Halanaerobiales capable of reducing crystalline goethite and hematite. This study expands the scope of phylogenetic affiliations, metabolic capacities, and catalytic mechanisms for iron-reducing microbes.

Indexed as

BacillotaBacterial Typing TechniquesDNA, BacterialDNA, RibosomalFerric CompoundsGenes, rRNAGenome, BacterialGeobacterGeologic SedimentsIron CompoundsMetalsMineralsOxidation-ReductionPhylogenyRNA, Ribosomal, 16SShewanellaDNA, BacterialDNA, RibosomalFerric Compoundsferric oxideferric oxyhydroxidegoethiteIron CompoundsMetalsMineralsRNA, Ribosomal, 16S

Identifiers

PMID27565620
PMCPMC5066361
OpenAlexW2534127946

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.