Evidence map›Paper›PMID 27565479›Full record

ArticlePlant cell reports2016

Fatty acid ω-hydroxylases from Solanum tuberosum.

Anica Bjelica, Meghan L Haggitt, Kathlyn N Woolfson, Daniel P N Lee, Abdullah B Makhzoum, Mark A Bernards

Abstract read
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In one paragraph

Article in Plant cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.1field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Suberin Biosynthesis, Assembly, and Regulation.Plants (Basel, Switzerland) · 2022
    Review
  4. Article
  5. Unique Features ofInternational journal of molecular sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Anica BjelicaDepartment of Biology and the Biotron, The University of Western Ontario, London, ON, N6A 5B7, Canada.
Meghan L HaggittDepartment of Biology and the Biotron, The University of Western Ontario, London, ON, N6A 5B7, Canada.
Kathlyn N WoolfsonDepartment of Biology and the Biotron, The University of Western Ontario, London, ON, N6A 5B7, Canada.
Daniel P N LeeDepartment of Biology and the Biotron, The University of Western Ontario, London, ON, N6A 5B7, Canada.
Abdullah B MakhzoumDepartment of Biology and the Biotron, The University of Western Ontario, London, ON, N6A 5B7, Canada.
Mark A BernardsDepartment of Biology and the Biotron, The University of Western Ontario, London, ON, N6A 5B7, Canada. bernards@uwo.ca.
Western University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messagePotato StCYP86A33 complements the Arabidopsis AtCYP86A1 mutant, horst - 1. Suberin is a cell-wall polymer that comprises both phenolic and aliphatic components found in specialized plant cells. Aliphatic suberin is characterized by bi-functional fatty acids, typically ω-hydroxy fatty acids and α,ω-dioic acids, which are linked via glycerol to form a three-dimensional polymer network. In potato (Solanum tuberosum L.), over 65 % of aliphatics are either ω-hydroxy fatty acids or α,ω-dioic acids. Since the biosynthesis of α,ω-dioic acids proceeds sequentially through ω-hydroxy fatty acids, the formation of ω-hydroxy fatty acids represents a significant metabolic commitment during suberin deposition. Four different plant cytochrome P450 subfamilies catalyze ω-hydroxylation, namely, 86A, 86B, 94A, and 704B; though to date, only a few members have been functionally characterized. In potato, CYP86A33 has been identified and implicated in suberin biosynthesis through reverse genetics (RNAi); however, attempts to express the CYP86A33 protein and characterize its catalytic function have been unsuccessful. Herein, we describe eight fatty acid ω-hydroxylase genes (three CYP86As, one CYP86B, three CYP94As, and a CYP704B) from potato and demonstrate their tissue expression. We also complement the Arabidopsis cyp86A1 mutant horst-1 using StCYP86A33 under the control of the Arabidopsis AtCYP86A1 promoter. Furthermore, we provide preliminary analysis of the StCYP86A33 promoter using a hairy root transformation system to monitor pStCYP86A33::GUS expression constructs. These data confirm the functional role of StCYP86A33 as a fatty acid ω-hydroxylase, and demonstrate the utility of hairy roots in the study of root-specific genes.

Indexed as

Abscisic AcidBase SequenceCytochrome P-450 CYP4AGene Expression ProfilingGene Expression Regulation, EnzymologicGene Expression Regulation, PlantGenetic Complementation TestLipidsPlant ProteinsPlant RootsPlants, Genetically ModifiedPlant TubersPromoter Regions, GeneticSolanum tuberosumAbscisic AcidCytochrome P-450 CYP4ALipidsPlant ProteinssuberinCYP86A1CYP86A33PotatoSolanum tuberosum L.Suberinω-Hydroxylases

Identifiers

PMID27565479
OpenAlexW2514486372

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.