Evidence map›Paper›PMID 27564854›Full record

ArticleeLife2016

Overall energy conversion efficiency of a photosynthetic vesicle.

Melih Sener, Johan Strumpfer, Abhishek Singharoy, C Neil Hunter, Klaus Schulten

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
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  10. Review
  11. Review
  12. Article
  13. Cryo-EM structure of the four-subunitProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Article
  15. Light energy transduction in liposome-based artificial cells.Frontiers in bioengineering and biotechnology · 2023
    Review
  16. Cryo-EM structures of light-harvesting 2 complexes fromProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. Article
  18. 2.4-Å structure of the double-ringScience advances · 2022
    Article
  19. Article
  20. Cryo-EM Structure of theBiochemistry · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Melih SenerBeckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, United States.
Johan StrumpferBeckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, United States.
Abhishek SingharoyBeckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, United States.
C Neil HunterDepartment of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, United Kingdom.
Klaus SchultenBeckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, United States.ORCID 0000-0001-7192-9632
University of Illinois Urbana-Champaign · USUniversity of Sheffield · GB

Funding

WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
System-Level Simulation of a Bioenergetic MembraneR01GM067887 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2003 to 2018
$4.0M
Biotechnology and Biological Sciences Research Council BB/M000265/1European Research Council 338895NIGMS NIH HHS P41 GM104601NIGMS NIH HHS R01 GM067887
6 · The paper itself

Abstract

The chromatophore of purple bacteria is an intracellular spherical vesicle that exists in numerous copies in the cell and that efficiently converts sunlight into ATP synthesis, operating typically under low light conditions. Building on an atomic-level structural model of a low-light-adapted chromatophore vesicle from Rhodobacter sphaeroides, we investigate the cooperation between more than a hundred protein complexes in the vesicle. The steady-state ATP production rate as a function of incident light intensity is determined after identifying quinol turnover at the cytochrome bc1 complex (cytb⁢c1) as rate limiting and assuming that the quinone/quinol pool of about 900 molecules acts in a quasi-stationary state. For an illumination condition equivalent to 1% of full sunlight, the vesicle exhibits an ATP production rate of 82 ATP molecules/s. The energy conversion efficiency of ATP synthesis at illuminations corresponding to 1%-5% of full sunlight is calculated to be 0.12-0.04, respectively. The vesicle stoichiometry, evolutionarily adapted to the low light intensities in the habitat of purple bacteria, is suboptimal for steady-state ATP turnover for the benefit of protection against over-illumination.

Indexed as

Energy MetabolismAdenosine TriphosphateBacterial ChromatophoresHydroquinonesLightQuinonesRhodobacter sphaeroidesAdenosine TriphosphateHydroquinonesQuinonesATP productionbacterial photosynthesisbiophysicscomputational biologyenergy conversion efficiencyexcitation transferRhodobacter sphaeroidesstructural biologysystems biology

Identifiers

PMID27564854
PMCPMC5001839
OpenAlexW2516113548

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.