Evidence map›Paper›PMID 27564240›Full record

ArticlePloS one2016

Spatio-Temporal Distribution of Mycobacterium tuberculosis Complex Strains in Ghana.

Dorothy Yeboah-Manu, P Asare, A Asante-Poku, I D Otchere, S Osei-Wusu, E Danso, A Forson, K A Koram, Sebastien Gagneux

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
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  10. Macrophage susceptibility to infection by GhanaianFrontiers in cellular and infection microbiology · 2023
    Article
  11. Article
  12. Review
  13. Molecular epidemiology and genetic diversity of Mycobacterium tuberculosis complex in referral health centers of Bamako, Mali: What is new?International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2022
    Article
  14. Review
  15. Molecular detection ofNew microbes and new infections · 2021
    Article
  16. Article
  17. Genomic epidemiological analysis identifies high relapse among individuals with recurring tuberculosis and provides evidence of recent household-related transmission of tuberculosis in Ghana.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Dorothy Yeboah-ManuNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Accra, Ghana.ORCID http://orcid.org/0000-0002-1663-6287
P AsareNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Accra, Ghana.
A Asante-PokuNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Accra, Ghana.
I D OtchereNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Accra, Ghana.
S Osei-WusuNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Accra, Ghana.
E DansoNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Accra, Ghana.
A ForsonDepartment of Chest Diseases, Korle-Bu Teaching Hospital, Korle-bu, Accra, Ghana.
K A KoramNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Accra, Ghana.
Sebastien GagneuxDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundThere is a perception that genomic differences in the species/lineages of the nine species making the Mycobacterium tuberculosis complex (MTBC) may affect the efficacy of distinct control tools in certain geographical areas. We therefore analyzed the prevalence and spatial distribution of MTBC species and lineages among isolates from pulmonary TB cases over an 8-year period, 2007-2014. METHODOLOGY: Mycobacterial species isolated by culture from consecutively recruited pulmonary tuberculosis patients presenting at selected district/sub-district health facilities were confirmed as MTBC by IS6110 and rpoß PCR and further assigned lineages and sub lineages by spoligotyping and large sequence polymorphism PCR (RDs 4, 9, 12, 702, 711) assays. Patient characteristics, residency, and risks were obtained with a structured questionnaire. We used SaTScan and ArcMap analyses to identify significantly clustered MTBC lineages within selected districts and spatial display, respectively.

resultsAmong 2,551 isolates, 2,019 (79.1%), 516 (20.2%) and 16 (0.6%) were identified as M. tuberculosis sensu stricto (MTBss), M. africanum (Maf), 15 M. bovis and 1 M. caprae, respectively. The proportions of MTBss and Maf were fairly constant within the study period. Maf spoligotypes were dominated by Spoligotype International Type (SIT) 331 (25.42%), SIT 326 (15.25%) and SIT 181 (14.12%). We found M. bovis to be significantly higher in Northern Ghana (1.9% of 212) than Southern Ghana (0.5% of 2339) (p = 0.020). Using the purely spatial and space-time analysis, seven significant MTBC lineage clusters (p< 0.05) were identified. Notable among the clusters were Ghana and Cameroon sub-lineages found to be associated with north and south, respectively.

conclusionThis study demonstrated that overall, 79.1% of TB in Ghana is caused by MTBss and 20% by M. africanum. Unlike some West African Countries, we did not observe a decline of Maf prevalence in Ghana.

Indexed as

AdolescentAdultAgedAged, 80 and overChildChild, PreschoolFemaleGenotypeGhanaHumansMaleMiddle AgedMycobacterium tuberculosisPhylogenyPolymerase Chain ReactionPolymorphism, Genetic

Identifiers

PMID27564240
PMCPMC5001706

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.