ArticleScientific reports2016
Genome-wide characterization of microsatellites in Triticeae species: abundance, distribution and evolution.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- Analysis of chloroplast genomes and SSR classification and identification of Agropyron species and closely related species.Scientific reports · 2026Article
- Generation and characterization of novel transcriptome-derived SSR markers for genetic applications in blueberry.Scientific reports · 2025Article
- Genome-wide microsatellite characterization and their marker development and transferability in Broussonetia Species.BMC genomics · 2025Article
- Development of Genome-Wide SSR Markers inInternational journal of molecular sciences · 2025Article
- TriticeaeSSRdb: a comprehensive database of simple sequence repeats inFrontiers in plant science · 2024Article
- TheCells · 2023Review
- CRISPR/Cas9 Editing Sites Identification and Multi-Elements Association Analysis inInternational journal of molecular sciences · 2023Article
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- A Pipeline for the Development of Microsatellite Markers using Next Generation Sequencing Data.Current genomics · 2022Article
- Rapid Genome-Wide Location-Specific Polymorphic SSR Marker Discovery in Black Pepper by GBS Approach.Frontiers in plant science · 2022Article
- Characterization of Microsatellites in theFrontiers in plant science · 2022Article
- Cytogenetic identification and molecular marker development of a novel wheat-Frontiers in plant science · 2022Article
- Genome-wide simple sequence repeat markers in potato: abundance, distribution, composition, and polymorphism.DNA research : an international journal for rapid publication of reports on genes and genomes · 2021Article
- Genome-wide characterization of simple sequence repeats in Palmae genomes.Genes & genomics · 2020Article
- Detection and application of genome-wide variations in peach for association and genetic relationship analysis.BMC genetics · 2019Article
- Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.).BMC genomics · 2019Article
- Molecular genotyping, diversity studies and high-resolution molecular markers unveiled by microsatellites in Giardia duodenalis.PLoS neglected tropical diseases · 2018Article
- Genome-wide characterization of microsatellites and genetic diversity assessment of spinach in the Chinese germplasm collection.Breeding science · 2018Article
- Large-scale analysis reveals that the genome features of simple sequence repeats are generally conserved at the family level in insects.BMC genomics · 2017Article
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7 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Microsatellites are an important constituent of plant genome and distributed across entire genome. In this study, genome-wide analysis of microsatellites in 8 Triticeae species and 9 model plants revealed that microsatellite characteristics were similar among the Triticeae species. Furthermore, genome-wide microsatellite markers were designed in wheat and then used to analyze the evolutionary relationship of wheat and other Triticeae species. Results displayed that Aegilops tauschii was found to be the closest species to Triticum aestivum, followed by Triticum urartu, Triticum turgidum and Aegilops speltoides, while Triticum monococcum, Aegilops sharonensis and Hordeum vulgare showed a relatively lower PCR amplification effectivity. Additionally, a significantly higher PCR amplification effectivity was found in chromosomes at the same subgenome than its homoeologous when these markers were subjected to search against different chromosomes in wheat. After a rigorous screening process, a total of 20,666 markers showed high amplification and polymorphic potential in wheat and its relatives, which were integrated with the public available wheat markers and then anchored to the genome of wheat (CS). This study not only provided the useful resource for SSR markers development in Triticeae species, but also shed light on the evolution of polyploid wheat from the perspective of microsatellites.
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