ArticlePloS one2016
The Complete Chloroplast Genome Sequence of a Relict Conifer Glyptostrobus pensilis: Comparative Analysis and Insights into Dynamics of Chloroplast Genome Rearrangement in Cupressophytes and Pinaceae.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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19 citing papers in PubMed, 32 citations in OpenAlex.
- Characterization of chloroplast genome and phylogenetic analysis of a geographic provenance of Glyptostrobus pensilis.BMC research notes · 2026Article
- Sequence characteristics, genetic diversity and phylogenetic analysis of the Cucurbita ficifolia (Cucurbitaceae) chloroplasts genome.BMC genomics · 2024Article
- Comprehensive Comparative Analyses ofGenes · 2023Article
- Complete chloroplast genome of Lens lamottei reveals intraspecies variation among with Lens culinaris.Scientific reports · 2023Article
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- Plastomes of limestone karst gesneriad genera Petrocodon and Primulina, and the comparative plastid phylogenomics of Gesneriaceae.Scientific reports · 2022Article
- The dynamic history of gymnosperm plastomes: Insights from structural characterization, comparative analysis, phylogenomics, and time divergence.The plant genome · 2021Article
- Molecular evolution and SSRs analysis based on the chloroplast genome ofEcology and evolution · 2021Article
- Comparative plastid genomics of four Pilea (Urticaceae) species: insight into interspecific plastid genome diversity in Pilea.BMC plant biology · 2021Article
- Complete Chloroplast Genome ofPlants (Basel, Switzerland) · 2020Article
- Comparative chloroplast genomics of the genus Taxodium.BMC genomics · 2020Article
- Long-reads reveal thatPeerJ · 2020Article
- Characterization of the complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2019Article
- Development of chloroplast microsatellite markers forApplications in plant sciences · 2019Article
- Development of microsatellite markers for a monotypic and globally endangered species,Applications in plant sciences · 2019Article
- Comparative Genomic Analysis Reveals the Mechanism Driving the Diversification of Plastomic Structure in Taxaceae Species.Frontiers in genetics · 2019Article
- Complete chloroplast genome sequence and comparative analysis of loblolly pine (Pinus taeda L.) with related species.PloS one · 2018Article
- Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis.Scientific reports · 2017Article
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11 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Glyptostrobus pensilis, belonging to the monotypic genus Glyptostrobus (Family: Cupressaceae), is an ancient conifer that is naturally distributed in low-lying wet areas. Here, we report the complete chloroplast (cp) genome sequence (132,239 bp) of G. pensilis. The G. pensilis cp genome is similar in gene content, organization and genome structure to the sequenced cp genomes from other cupressophytes, especially with respect to the loss of the inverted repeat region A (IRA). Through phylogenetic analysis, we demonstrated that the genus Glyptostrobus is closely related to the genus Cryptomeria, supporting previous findings based on physiological characteristics. Since IRs play an important role in stabilize cp genome and conifer cp genomes lost different IR regions after splitting in two clades (cupressophytes and Pinaceae), we performed cp genome rearrangement analysis and found more extensive cp genome rearrangements among the species of cupressophytes relative to Pinaceae. Additional repeat analysis indicated that cupressophytes cp genomes contained less potential functional repeats, especially in Cupressaceae, compared with Pinaceae. These results suggested that dynamics of cp genome rearrangement in conifers differed since the two clades, Pinaceae and cupressophytes, lost IR copies independently and developed different repeats to complement the residual IRs. In addition, we identified 170 perfect simple sequence repeats that will be useful in future research focusing on the evolution of genetic diversity and conservation of genetic variation for this endangered species in the wild.
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