Evidence map›Paper›PMID 27560794›Full record

ArticlePloS one2016

Ultrasensitive HCV RNA Quantification in Antiviral Triple Therapy: New Insight on Viral Clearance Dynamics and Treatment Outcome Predictors.

Anna Rosa Garbuglia, Ubaldo Visco-Comandini, Raffaella Lionetti, Daniele Lapa, Filippo Castiglione, Gianpiero D'Offizi, Chiara Taibi, Marzia Montalbano, Maria Rosaria Capobianchi, Paola Paci

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Trial
  2. Article
  3. Hepatitis C virus: life cycle in cells, infection and host response, and analysis of molecular markers influencing the outcome of infection and response to therapy.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Anna Rosa GarbugliaLaboratory of Virology, "Lazzaro Spallanzani" National Institute for Infectious Diseases, IRCCS, Rome, Italy.
Ubaldo Visco-ComandiniClinical Department, "Lazzaro Spallanzani" National Institute for Infectious Diseases, IRCCS, Rome, Italy.
Raffaella LionettiClinical Department, "Lazzaro Spallanzani" National Institute for Infectious Diseases, IRCCS, Rome, Italy.
Daniele LapaLaboratory of Virology, "Lazzaro Spallanzani" National Institute for Infectious Diseases, IRCCS, Rome, Italy.
Filippo CastiglioneIstituto per le Applicazioni del Calcolo (IAC)-CNR, Rome, Italy.
Gianpiero D'OffiziClinical Department, "Lazzaro Spallanzani" National Institute for Infectious Diseases, IRCCS, Rome, Italy.
Chiara TaibiClinical Department, "Lazzaro Spallanzani" National Institute for Infectious Diseases, IRCCS, Rome, Italy.
Marzia MontalbanoClinical Department, "Lazzaro Spallanzani" National Institute for Infectious Diseases, IRCCS, Rome, Italy.
Maria Rosaria CapobianchiLaboratory of Virology, "Lazzaro Spallanzani" National Institute for Infectious Diseases, IRCCS, Rome, Italy.
Paola PaciIstituto di Analisi dei Sistemi ed Informatica "Antonio Ruberti" (IASI)-CNR, Rome, Italy.
Istituto Nazionale per le Malattie Infettive Lazzaro Spallanzani · ITIstituti di Ricovero e Cura a Carattere Scientifico · ITIstituto di Analisi dei Sistemi ed Informatica Antonio Ruberti · ITIstituto per le Applicazioni del Calcolo Mauro Picone · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesIdentifying the predictive factors of Sustained Virological Response (SVR) represents an important challenge in new interferon-based DAA therapies. Here, we analyzed the kinetics of antiviral response associated with a triple drug regimen, and the association between negative residual viral load at different time points during treatment.

methodsTwenty-three HCV genotype 1 (GT 1a n = 11; GT1b n = 12) infected patients were included in the study. Linear Discriminant Analysis (LDA) was used to establish possible association between HCV RNA values at days 1 and 4 from start of therapy and SVR. Principal component analysis (PCA) was applied to analyze the correlation between HCV RNA slope and SVR. A ultrasensitive (US) method was established to measure the residual HCV viral load in those samples which resulted "detected <12IU/ml" or undetectable with ABBOTT standard assay, and was retrospectively used on samples collected at different time points to establish its predictive power for SVR.

resultsAccording to LDA, there was no association between SVR and viral kinetics neither at time points earlier than 1 week (days 1 and 4) after therapy initiation nor later. The slopes were not relevant for classifying patients as SVR or no-SVR. No significant differences were observed in the median HCV RNA values at T0 among SVR and no-SVR patients. HCV RNA values with US protocol (LOD 1.2 IU/ml) after 1 month of therapy were considered; the area under the ROC curve was 0.70. Overall, PPV and NPV of undetectable HCV RNA with the US method for SVR was 100% and 46.7%, respectively; sensitivity and specificity were 38.4% and 100% respectively.

conclusionHCV RNA "not detected" by the US method after 1 month of treatment is predictive of SVR in first generation Protease inhibitor (PI)-based triple therapy. The US method could have clinical utility for advanced monitoring of virological response in new interferon based DAA combination regimens.

Indexed as

AgedAntiviral AgentsDrug Therapy, CombinationFemaleHepacivirusHepatitis C, ChronicHost-Pathogen InteractionsHumansInterferon-alphaMaleMiddle AgedOligopeptidesPolyethylene GlycolsPrincipal Component AnalysisRibavirinRNA, ViralAntiviral AgentsInterferon-alphaOligopeptidesPolyethylene GlycolsRibavirinRNA, Viraltelaprevir

Identifiers

PMID27560794
PMCPMC4999094
OpenAlexW2517548180

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.