Evidence map›Paper›PMID 27560698›Full record

ArticlePLoS genetics2016

Genomewide Association Study of African Children Identifies Association of SCHIP1 and PDE8A with Facial Size and Shape.

Joanne B Cole, Mange Manyama, Emmanuel Kimwaga, Joshua Mathayo, Jacinda R Larson, Denise K Liberton, Ken Lukowiak, Tracey M Ferrara, Sheri L Riccardi, Mao Li and 9 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 2 pooled it
23.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 2 syntheses or guidelines pooled it, 105 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  4. Article
  5. Review
  6. De Novo Reconstruction of 3D Human Facial Images from DNA Sequence.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
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  17. Effect of genetic variants inForensic sciences research · 2023
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 4 countries.

Joanne B ColeHuman Medical Genetics and Genomics Program, University of Colorado School of Medicine, Aurora, Colorado, United States of America.ORCID 0000-0001-9520-2788
Mange ManyamaDepartment of Anatomy, Catholic University of Health and Allied Sciences, Mwanza, Tanzania.
Emmanuel KimwagaDepartment of Anatomy, Catholic University of Health and Allied Sciences, Mwanza, Tanzania.
Joshua MathayoDepartment of Anatomy, Catholic University of Health and Allied Sciences, Mwanza, Tanzania.
Jacinda R LarsonDepartment of Anatomy and Cell Biology and McCaig Institute for Bone and Joint Health, University of Calgary, Calgary, Canada.
Denise K LibertonDepartment of Anatomy and Cell Biology and McCaig Institute for Bone and Joint Health, University of Calgary, Calgary, Canada.
Ken LukowiakHotchkiss Brain Institute, Cummings School of Medicine, University of Calgary, Calgary, Canada.
Tracey M FerraraHuman Medical Genetics and Genomics Program, University of Colorado School of Medicine, Aurora, Colorado, United States of America.ORCID 0000-0003-2698-1022
Sheri L RiccardiHuman Medical Genetics and Genomics Program, University of Colorado School of Medicine, Aurora, Colorado, United States of America.
Mao LiDepartment of Mathematics, Florida State University, Tallahassee, Florida, United States of America.
Washington MioDepartment of Mathematics, Florida State University, Tallahassee, Florida, United States of America.ORCID 0000-0003-1106-8089
Michaela ProchazkovaLaboratory of Transgenic Models of Diseases, Institute of Molecular Genetics of the ASCR, Prague, Czech Republic.ORCID 0000-0002-3773-8995
Trevor WilliamsDepartment of Craniofacial Biology, University of Colorado School of Dental Medicine, Aurora, Colorado, United States of America.
Hong LiDepartment of Craniofacial Biology, University of Colorado School of Dental Medicine, Aurora, Colorado, United States of America.
Kenneth L JonesDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, Colorado, United States of America.
Ophir D KleinDepartment of Orofacial Sciences and Program in Craniofacial Biology, University of California San Francisco, San Francisco, California, United States of America.
Stephanie A SantoricoHuman Medical Genetics and Genomics Program, University of Colorado School of Medicine, Aurora, Colorado, United States of America.
Benedikt HallgrimssonDepartment of Anatomy and Cell Biology and McCaig Institute for Bone and Joint Health, University of Calgary, Calgary, Canada.
Richard A SpritzHuman Medical Genetics and Genomics Program, University of Colorado School of Medicine, Aurora, Colorado, United States of America.
University of Colorado Denver · USUniversity of Calgary · CACatholic University of Health and Allied Sciences · TZFlorida State University · USUniversity of California, San Francisco · USColorado School of Public Health · US

Funding

Colorado Clinical and Translational Sciences InstituteUL1TR001082 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2013 to 2017
$48.0M
Genetic Determinants of Orofacial Shape and Relationship to Cleft Lip/PalateU01DE020054 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI SPRITZ, RICHARD ANDREW · 2009 to 2014
$2.4M
RNA dynamics in the developing mouse faceU01DE024429 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI HOOPER, JOAN E, JONES, KENNETH LLOYD · 2014 to 2018
$1.7M
NCATS NIH HHS UL1 TR001082NIDCR NIH HHS U01 DE020054NIDCR NIH HHS U01 DE024429
6 · The paper itself

Abstract

The human face is a complex assemblage of highly variable yet clearly heritable anatomic structures that together make each of us unique, distinguishable, and recognizable. Relatively little is known about the genetic underpinnings of normal human facial variation. To address this, we carried out a large genomewide association study and two independent replication studies of Bantu African children and adolescents from Mwanza, Tanzania, a region that is both genetically and environmentally relatively homogeneous. We tested for genetic association of facial shape and size phenotypes derived from 3D imaging and automated landmarking of standard facial morphometric points. SNPs within genes SCHIP1 and PDE8A were associated with measures of facial size in both the GWAS and replication cohorts and passed a stringent genomewide significance threshold adjusted for multiple testing of 34 correlated traits. For both SCHIP1 and PDE8A, we demonstrated clear expression in the developing mouse face by both whole-mount in situ hybridization and RNA-seq, supporting their involvement in facial morphogenesis. Ten additional loci demonstrated suggestive association with various measures of facial shape. Our findings, which differ from those in previous studies of European-derived whites, augment understanding of the genetic basis of normal facial development, and provide insights relevant to both human disease and forensics.

Indexed as

Genome-Wide Association Study3',5'-Cyclic-AMP PhosphodiesterasesAdolescentAnimalsBlack PeopleCarrier ProteinsFaceFemaleHumansMaleMaxillofacial DevelopmentMiceMorphogenesisPhenotypePolymorphism, Single NucleotideTanzania3',5'-Cyclic-AMP PhosphodiesterasesCarrier ProteinsPDE8A protein, humanSCHIP1 protein, human

Identifiers

PMID27560698
PMCPMC4999243
OpenAlexW2509581937

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.