Evidence map›Paper›PMID 27560544›Full record

ArticleCytometry. Part A : the journal of the International Society for Analytical Cytology2016

A supervised learning framework for pancreatic islet segmentation with multi-scale color-texture features and rolling guidance filters.

Yue Huang, Chi Liu, John F Eisses, Sohail Z Husain, Gustavo K Rohde

Abstract read
In one paragraph

Article in Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yue HuangSchool of Information Science and Engineering, Xiamen University, Xiamen, China.
Chi LiuDepartment of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, 15213, Pennsylvania.
John F EissesDepartment of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, 15224, Pennsylvania.
Sohail Z HusainDepartment of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, 15224, Pennsylvania.
Gustavo K RohdeDepartment of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, 15213, Pennsylvania. gustavor@cmu.edu.

Funding

Molecular Basis of Pediatric DiseaseK12HD052892 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TERENCE S. DERMODY · 2007 to 2026
$6.5M
Calcineurin in pancreatitisR01DK093491 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HUSAIN, SOHAIL Z · 2011 to 2020
$3.7M
HDACs in pancreatic recovery after injuryR01DK103002 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HUSAIN, SOHAIL Z · 2014 to 2017
$1.6M
NICHD NIH HHS K12 HD052892NIDDK NIH HHS R01 DK093491NIDDK NIH HHS R01 DK103002
6 · The paper itself

Abstract

Islet cell quantification and function is important for developing novel therapeutic interventions for diabetes. Existing methods of pancreatic islet segmentation in histopathological images depend strongly on cell/nuclei detection, and thus are limited due to a wide variance in the appearance of pancreatic islets. In this paper, we propose a supervised learning pipeline to segment pancreatic islets in histopathological images, which does not require cell detection. The proposed framework firstly partitions images into superpixels, and then extracts multi-scale color-texture features from each superpixel and processes these features using rolling guidance filters, in order to simultaneously reduce inter-class ambiguity and intra-class variation. Finally, a linear support vector machine (SVM) is trained and applied to segment the testing images. A total of 23 hematoxylin-and-eosin-stained histopathological images with pancreatic islets are used for verifying the framework. With an average accuracy of 95%, training time of 20 min and testing time of 1 min per image, the proposed framework outperforms existing approaches with better segmentation performance and lower computational cost. © 2016 International Society for Advancement of Cytometry.

Indexed as

AnimalsDiagnostic ImagingImage EnhancementImage Interpretation, Computer-AssistedIslets of LangerhansMaleMicePattern Recognition, AutomatedSupport Vector Machinehistopathological image segmentationmulti-scale featurespancreatic isletrolling guidance filtersupervised learning

Identifiers

PMID27560544
PMCPMC5515086

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.