Evidence map›Paper›PMID 27560183›Full record

ArticlePLoS pathogens2016

Minimally Mutated HIV-1 Broadly Neutralizing Antibodies to Guide Reductionist Vaccine Design.

Joseph G Jardine, Devin Sok, Jean-Philippe Julien, Bryan Briney, Anita Sarkar, Chi-Hui Liang, Erin A Scherer, Carole J Henry Dunand, Yumiko Adachi, Devan Diwanji and 14 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 143 citations in OpenAlex.

  1. Trial
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  8. Antibody feedback establishes an affinity brake in the germinal center.bioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Review
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  12. Structural insights into VRC01-class bnAb precursors with diverse light chains elicited in the IAVI G001 human vaccine trial.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Article
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  15. Article
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40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 3 institutions in 2 countries.

Joseph G JardineDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Devin SokDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Jean-Philippe JulienIAVI Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, California, United States of America.
Bryan BrineyDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Anita SarkarIAVI Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, California, United States of America.
Chi-Hui LiangDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Erin A SchererHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Carole J Henry DunandDepartment of Medicine, Section of Rheumatology, The Knapp Center for Lupus and Immunology Research, The University of Chicago, Chicago, Illinois, United States of America.
Yumiko AdachiDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Devan DiwanjiDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America.
Jessica HsuehDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.ORCID 0000-0002-4070-5270
Meaghan JonesDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Oleksandr KalyuzhniyDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Michael KubitzDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Skye SpencerDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Matthias PauthnerDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Karen L Saye-FranciscoDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Fabian SesterhennDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Patrick C WilsonDepartment of Medicine, Section of Rheumatology, The Knapp Center for Lupus and Immunology Research, The University of Chicago, Chicago, Illinois, United States of America.
Denise M GallowayHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Robyn L StanfieldIAVI Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, California, United States of America.
Ian A WilsonIAVI Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, California, United States of America.
Dennis R BurtonDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
William R SchiefDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Scripps Research Institute · USFred Hutch Cancer Center · USUniversity of Chicago · US

Funding

Support Component D/Vaccine Discovery, Concept to ClinicUM1AI100663 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BAROUCH, DAN H. · 2012 to 2018
$131.5M
Structural studies of native-like SOSIP trimersP01AI110657 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI MOORE, JOHN P · 2015 to 2024
$35.4M
PATHOGENESIS AND IMMUNOLOGY OF DISEASET32AI007244 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 1985 to 2022
$8.8M
Monitoring the development of anti-Env Abs during HIV infectionR01AI081625 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STAMATATOS, LEONIDAS · 2010 to 2020
$5.8M
Structural Biology of HIV-1 Neutralizing Antibody Targets for Vaccine DesignR01AI084817 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2009 to 2013
$3.2M
Structure and dynamics of native HIV-1 envelope trimersR56AI084817 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2015 to 2015
$593k
NIAID NIH HHS P01 AI110657NIAID NIH HHS R01 AI081625NIAID NIH HHS R01 AI084817NIAID NIH HHS R56 AI084817NIAID NIH HHS T32 AI007244NIAID NIH HHS UM1 AI100663
6 · The paper itself

Abstract

An optimal HIV vaccine should induce broadly neutralizing antibodies (bnAbs) that neutralize diverse viral strains and subtypes. However, potent bnAbs develop in only a small fraction of HIV-infected individuals, all contain rare features such as extensive mutation, insertions, deletions, and/or long complementarity-determining regions, and some are polyreactive, casting doubt on whether bnAbs to HIV can be reliably induced by vaccination. We engineered two potent VRC01-class bnAbs that minimized rare features. According to a quantitative features frequency analysis, the set of features for one of these minimally mutated bnAbs compared favorably with all 68 HIV bnAbs analyzed and was similar to antibodies elicited by common vaccines. This same minimally mutated bnAb lacked polyreactivity in four different assays. We then divided the minimal mutations into spatial clusters and dissected the epitope components interacting with those clusters, by mutational and crystallographic analyses coupled with neutralization assays. Finally, by synthesizing available data, we developed a working-concept boosting strategy to select the mutation clusters in a logical order following a germline-targeting prime. We have thus developed potent HIV bnAbs that may be more tractable vaccine goals compared to existing bnAbs, and we have proposed a strategy to elicit them. This reductionist approach to vaccine design, guided by antibody and antigen structure, could be applied to design candidate vaccines for other HIV bnAbs or protective Abs against other pathogens.

Indexed as

Drug DesignAIDS VaccinesAmino Acid SequenceAntibodies, NeutralizingHigh-Throughput Screening AssaysHIV-1HIV AntibodiesHIV InfectionsHumansModels, MolecularMutationAIDS VaccinesAntibodies, NeutralizingHIV Antibodies

Identifiers

PMID27560183
PMCPMC4999182
OpenAlexW2514181687

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.