Evidence map›Paper›PMID 27559342›Full record

ReviewFrontiers in genetics2016

Data Mining and Pattern Recognition Models for Identifying Inherited Diseases: Challenges and Implications.

Lahiru Iddamalgoda, Partha S Das, Achala Aponso, Vijayaraghava S Sundararajan, Prashanth Suravajhala, Jayaraman K Valadi

Abstract readReview
In one paragraph

Review in Frontiers in genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Overview of frequent pattern mining.Genomics & informatics · 2022
    Article
  4. Article
  5. Systems Challenges of Hepatic Carcinomas: A Review.Journal of clinical and experimental hepatology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lahiru IddamalgodaDepartment of Computing, Informatics Institute of Technology, University of Westminster Colombo, Sri Lanka.
Partha S DasDepartment of Microbiology, Bioinformatics Infrastructure Facility, Vidyasagar UniversityMidnapore, India; Bioinformatics, Bioclues OrganizationHyderabad, India.
Achala AponsoDepartment of Computing, Informatics Institute of Technology, University of Westminster Colombo, Sri Lanka.
Vijayaraghava S SundararajanBioinformatics, Bioclues OrganizationHyderabad, India; Environmental Health Institute, National Environment Agency, SingaporeSingapore.
Prashanth SuravajhalaBioinformatics, Bioclues OrganizationHyderabad, India; Molecular Biology and Genetics, Quantitative Genetics and Genomics, Aarhus UniversityTjele, Denmark; Bioinformatics, Bioinformatics OrganizationHudson, MA, USA.
Jayaraman K ValadiBioinformatics, Bioclues Organization Hyderabad, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Data mining and pattern recognition methods reveal interesting findings in genetic studies, especially on how the genetic makeup is associated with inherited diseases. Although researchers have proposed various data mining models for biomedical approaches, there remains a challenge in accurately prioritizing the single nucleotide polymorphisms (SNP) associated with the disease. In this commentary, we review the state-of-art data mining and pattern recognition models for identifying inherited diseases and deliberate the need of binary classification- and scoring-based prioritization methods in determining causal variants. While we discuss the pros and cons associated with these methods known, we argue that the gene prioritization methods and the protein interaction (PPI) methods in conjunction with the K nearest neighbors' could be used in accurately categorizing the genetic factors in disease causation.

Indexed as

data mininginherited diseasesmachine learningprotein-protein interactionsingle nucleotide polymorphism

Identifiers

PMID27559342
PMCPMC4979376

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.