Evidence map›Paper›PMID 27559131›Full record

ArticleMolecular biology of the cell2016

C9orf72 binds SMCR8, localizes to lysosomes, and regulates mTORC1 signaling.

Joseph Amick, Agnes Roczniak-Ferguson, Shawn M Ferguson

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed
15.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed, 189 citations in OpenAlex.

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  9. Neuronal activity-dependent gene dysregulation inAmerican journal of physiology. Cell physiology · 2025
    Article
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  12. Targeting GeneInternational journal of molecular sciences · 2025
    Review
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65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Joseph AmickDepartment of Cell Biology and Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, CT 06510.
Agnes Roczniak-FergusonDepartment of Cell Biology and Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, CT 06510.
Shawn M FergusonDepartment of Cell Biology and Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, CT 06510 shawn.ferguson@yale.edu.
Hospital for Sick Children · CA

Funding

Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
Yale Alzheimer Disease Research CenterP50AG047270 · NIA · YALE UNIVERSITY · PI STRITTMATTER, STEPHEN M · 2015 to 2019
$8.3M
Yale Rheumatic Diseases Research Core CenterP30AR053495 · NIAMS · YALE UNIVERSITY · PI SHLOMCHIK, WARREN D · 2007 to 2017
$7.0M
Molecular mechanisms that match lysosome function to cellular demandR01GM105718 · NIGMS · YALE UNIVERSITY · PI FERGUSON, SHAWN · 2013 to 2022
$2.9M
Amnis ImageStream Analyzer for the Yale Flow CoreS10RR026526 · NCRR · YALE UNIVERSITY · PI SHLOMCHIK, MARK J · 2010 to 2010
$455k
Investigation of a novel protein complex that couples regulation of lysosomal function to intracellular nutrient availabilityF31GM119249 · NIGMS · YALE UNIVERSITY · PI AMICK, JOSEPH RYAN · 2016 to 2017
$72k
NCRR NIH HHS S10 RR026526NIAMS NIH HHS P30 AR053495NIA NIH HHS P50 AG047270NIGMS NIH HHS F31 GM119249NIGMS NIH HHS R01 GM105718NIGMS NIH HHS T32 GM007223
6 · The paper itself

Abstract

Hexanucleotide expansion in an intron of the C9orf72 gene causes amyotrophic lateral sclerosis and frontotemporal dementia. However, beyond bioinformatics predictions that suggested structural similarity to folliculin, the Birt-Hogg-Dubé syndrome tumor suppressor, little is known about the normal functions of the C9orf72 protein. To address this problem, we used genome-editing strategies to investigate C9orf72 interactions, subcellular localization, and knockout (KO) phenotypes. We found that C9orf72 robustly interacts with SMCR8 (a protein of previously unknown function). We also observed that C9orf72 localizes to lysosomes and that such localization is negatively regulated by amino acid availability. Analysis of C9orf72 KO, SMCR8 KO, and double-KO cell lines revealed phenotypes that are consistent with a function for C9orf72 at lysosomes. These include abnormally swollen lysosomes in the absence of C9orf72 and impaired responses of mTORC1 signaling to changes in amino acid availability (a lysosome-dependent process) after depletion of either C9orf72 or SMCR8. Collectively these results identify strong physical and functional interactions between C9orf72 and SMCR8 and support a lysosomal site of action for this protein complex.

Indexed as

Biophysical PhenomenaC9orf72 ProteinCarrier ProteinsHEK293 CellsHeLa CellsHumansLysosomesMechanistic Target of Rapamycin Complex 1Multiprotein ComplexesMutationPhenotypeProteinsTOR Serine-Threonine KinasesC9orf72 ProteinC9orf72 protein, humanCarrier ProteinsMechanistic Target of Rapamycin Complex 1Multiprotein ComplexesProteinsSMCR8 protein, mouseTOR Serine-Threonine Kinases

Identifiers

PMID27559131
PMCPMC5063613
OpenAlexW2518003787

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.