Evidence map›Paper›PMID 27559109›Full record

SynthesisHuman molecular genetics2016

A genome-wide association meta-analysis of diarrhoeal disease in young children identifies FUT2 locus and provides plausible biological pathways.

Mariona Bustamante, Marie Standl, Quique Bassat, Natalia Vilor-Tejedor, Carolina Medina-Gomez, Carolina Bonilla, Tarunveer S Ahluwalia, Jonas Bacelis, Jonathan P Bradfield, Carla M T Tiesler and 29 more

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Human molecular genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 40 citations in OpenAlex.

  1. Pooled it
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  15. Article
  16. Rotavirus infection beyond the gut.Infection and drug resistance · 2019
    Review
  17. Genetic susceptibility to infectious diseases: Current status and future perspectives from genome-wide approaches.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2018
    Review
  18. Wellcome open research · 2018
    Article
  19. Big Data's Role in Precision Public Health.Frontiers in public health · 2018
    Review
  20. Methods for ascertaining norovirus disease burdens.Human vaccines & immunotherapeutics · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 19 institutions in 11 countries.

Mariona BustamanteISGlobal, Center for Research in Environmental Epidemiology (CREAL), Barcelona, Spain mariona.bustamante@isglobal.org.
Marie StandlInstitute of Epidemiology I, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.
Quique BassatISGlobal, Barcelona Ctr. Int. Health Res. (CRESIB), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain.
Natalia Vilor-TejedorISGlobal, Center for Research in Environmental Epidemiology (CREAL), Barcelona, Spain.
Carolina Medina-GomezThe Generation R Study Group, Erasmus MC, Rotterdam, The Netherlands.
Carolina BonillaMRC/University of Bristol Integrative Epidemiology Unit, University of Bristol, Bristol, UK.
Tarunveer S AhluwaliaCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark.
Jonas BacelisDepartment of Obstetrics and Gynecology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Jonathan P BradfieldCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Carla M T TieslerInstitute of Epidemiology I, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.
Fernando RivadeneiraThe Generation R Study Group, Erasmus MC, Rotterdam, The Netherlands.
Susan RingMRC/University of Bristol Integrative Epidemiology Unit, University of Bristol, Bristol, UK.
Nadja H VissingCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark.
Nadia R FinkCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark.
Astanand JugessurDepartment of Genetics and Bioinformatics, Area of Health Data and Digitalisation, Institute of Public Health, Oslo, Norway.
Frank D MentchCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Ferran BallesterCIBER Epidemiología y Salud Pública (CIBERESP), Barcelona, Spain.
Jennifer KriebelResearch Unit of Molecular Epidemiology, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.
Jessica C Kiefte-de JongDepartment of Epidemiology, Erasmus MC, Rotterdam, The Netherlands.
Helene M WolskCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark.
Sabrina LlopCIBER Epidemiología y Salud Pública (CIBERESP), Barcelona, Spain.
Elisabeth ThieringInstitute of Epidemiology I, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.
Systke A BethThe Generation R Study Group, Erasmus MC, Rotterdam, The Netherlands.
Nicholas J TimpsonMRC/University of Bristol Integrative Epidemiology Unit, University of Bristol, Bristol, UK.
Josefine AndersenCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark.
Holger SchulzInstitute of Epidemiology I, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.
Vincent W V JaddoeThe Generation R Study Group, Erasmus MC, Rotterdam, The Netherlands.
David M EvansMRC/University of Bristol Integrative Epidemiology Unit, University of Bristol, Bristol, UK.
Johannes WaageCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark.
Hakon HakonarsonCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Struan F A GrantCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Bo JacobssonDepartment of Obstetrics and Gynecology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Klaus BønnelykkeCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark.
Hans BisgaardCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark.
George Davey SmithMRC/University of Bristol Integrative Epidemiology Unit, University of Bristol, Bristol, UK.
Henriette A MollDepartment of Pediatrics, Erasmus MC, Rotterdam, The Netherlands.
Joachim HeinrichInstitute of Epidemiology I, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.
Xavier EstivillCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Jordi SunyerISGlobal, Center for Research in Environmental Epidemiology (CREAL), Barcelona, Spain.
Helmholtz Zentrum München · DEErasmus University Rotterdam · NLUniversity of Bristol · GBChildren's Hospital of Philadelphia · USCopenhagen Prospective Studies on Asthma in Childhood · DKGentofte Hospital · DKErasmus MC · NLNorwegian Institute of Public Health · NOUniversitat Jaume I · ESUniversity of Copenhagen · DKCentre for Genomic Regulation · ESHospital del Mar Research Institute · ESLMU Klinikum · DEMunicipal Institute for Medical Research · ESPompeu Fabra University · ESTranslational Research Institute · AUUniversitat de Barcelona · ESUniversity of Gothenburg · SEUniversity of Pennsylvania · US

Funding

Gene-Environment Interactions in an Autism Birth CohortU01NS047537 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LIPKIN, W. IAN · 2003 to 2013
$27.0M
Genome Wide Association Study for Childhood ObesityR01HD056465 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI GRANT, STRUAN F A · 2008 to 2024
$9.5M
Medical Research Council MC_UU_12013/4NICHD NIH HHS R01 HD056465NIEHS NIH HHS N01 ES075558NINDS NIH HHS U01 NS047537Wellcome Trust
6 · The paper itself

Abstract

More than a million childhood diarrhoeal episodes occur worldwide each year, and in developed countries a considerable part of them are caused by viral infections. In this study, we aimed to search for genetic variants associated with diarrhoeal disease in young children by meta-analyzing genome-wide association studies, and to elucidate plausible biological mechanisms. The study was conducted in the context of the Early Genetics and Lifecourse Epidemiology (EAGLE) consortium. Data about diarrhoeal disease in two time windows (around 1 year of age and around 2 years of age) was obtained via parental questionnaires, doctor interviews or medical records. Standard quality control and statistical tests were applied to the 1000 Genomes imputed genotypic data. The meta-analysis (N = 5758) followed by replication (N = 3784) identified a genome-wide significant association between rs8111874 and diarrhoea at age 1 year. Conditional analysis suggested that the causal variant could be rs601338 (W154X) in the FUT2 gene. Children with the A allele, which results in a truncated FUT2 protein, had lower risk of diarrhoea. FUT2 participates in the production of histo-blood group antigens and has previously been implicated in the susceptibility to infections, including Rotavirus and Norovirus Gene-set enrichment analysis suggested pathways related to the histo-blood group antigen production, and the regulation of ion transport and blood pressure. Among others, the gastrointestinal tract, and the immune and neuro-secretory systems were detected as relevant organs. In summary, this genome-wide association meta-analysis suggests the implication of the FUT2 gene in diarrhoeal disease in young children from the general population.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyAllelesChild, PreschoolDiarrheaFemaleFucosyltransferasesGalactoside 2-alpha-L-fucosyltransferaseGenotypeHumansInfantMalePolymorphism, Single NucleotideFucosyltransferasesGalactoside 2-alpha-L-fucosyltransferase

Identifiers

PMID27559109
PMCPMC5291237
OpenAlexW2509936128

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.