Evidence map›Paper›PMID 27559062›Full record

ArticleProceedings. Biological sciences2016

Diminishing-returns epistasis among random beneficial mutations in a multicellular fungus.

Sijmen Schoustra, Sungmin Hwang, Joachim Krug, J Arjan G M de Visser

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Article in Proceedings. Biological sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

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  14. Global epistasis on fitness landscapes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sijmen SchoustraLaboratory of Genetics, Wageningen University, Wageningen, The Netherlands sijmen.schoustra@wur.nl.ORCID 0000-0001-7843-5539
Sungmin HwangInstitute of Theoretical Physics, University of Cologne, Cologne, Germany.
Joachim KrugInstitute of Theoretical Physics, University of Cologne, Cologne, Germany.
J Arjan G M de VisserLaboratory of Genetics, Wageningen University, Wageningen, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adaptive evolution ultimately is fuelled by mutations generating novel genetic variation. Non-additivity of fitness effects of mutations (called epistasis) may affect the dynamics and repeatability of adaptation. However, understanding the importance and implications of epistasis is hampered by the observation of substantial variation in patterns of epistasis across empirical studies. Interestingly, some recent studies report increasingly smaller benefits of beneficial mutations once genotypes become better adapted (called diminishing-returns epistasis) in unicellular microbes and single genes. Here, we use Fisher's geometric model (FGM) to generate analytical predictions about the relationship between the effect size of mutations and the extent of epistasis. We then test these predictions using the multicellular fungus Aspergillus nidulans by generating a collection of 108 strains in either a poor or a rich nutrient environment that each carry a beneficial mutation and constructing pairwise combinations using sexual crosses. Our results support the predictions from FGM and indicate negative epistasis among beneficial mutations in both environments, which scale with mutational effect size. Hence, our findings show the importance of diminishing-returns epistasis among beneficial mutations also for a multicellular organism, and suggest that this pattern reflects a generic constraint operating at diverse levels of biological organization.

Indexed as

Epistasis, GeneticGenetic FitnessMutationAspergillus nidulansGenotypeModels, GeneticadaptationAspergillus nidulansbeneficial mutationepistasisFisher's geometric model

Identifiers

PMID27559062
PMCPMC5013798

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.