ArticlePlant physiology2016
SHORT HYPOCOTYL1 Encodes a SMARCA3-Like Chromatin Remodeling Factor Regulating Elongation.
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Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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20 citing papers in PubMed, 33 citations in OpenAlex.
- Identification of genetic loci and domestication gene GmZFP1 associated with soybean hypocotyl elongation in seedling stage by genome-wide association study.BMC plant biology · 2026Article
- The chromatin remodeller MdRAD5B enhances drought tolerance by coupling MdLHP1-mediated H3K27me3 in apple.Plant biotechnology journal · 2024Article
- Integrated Transcriptome and Proteome Analysis Revealed the Regulatory Mechanism of Hypocotyl Elongation in Pakchoi.International journal of molecular sciences · 2023Article
- A 5.5-kb LTR-retrotransposon insertion inside phytochrome B gene (CsPHYB) results in long hypocotyl and early flowering in cucumber (Cucumis sativus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- An LTR retrotransposon insertion inside CsERECTA for an LRR receptor-like serine/threonine-protein kinase results in compact (cp) plant architecture in cucumber.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- A mutation in CsHY2 encoding a phytochromobilin (PΦB) synthase leads to an elongated hypocotyl 1(elh1) phenotype in cucumber (Cucumis sativus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Genetic regulation of shoot architecture in cucumber.Horticulture research · 2021Review
- Mapping and identification of CsSh5.1, a gene encoding a xyloglucan galactosyltransferase required for hypocotyl elongation in cucumber (Cucumis sativus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Natural population re-sequencing detects the genetic basis of local adaptation to low temperature in a woody plant.Plant molecular biology · 2021Article
- Genomic Prediction and the Practical Breeding of 12 Quantitative-Inherited Traits in Cucumber (Frontiers in plant science · 2021Article
- Molecularly tagged genes and quantitative trait loci in cucumber with recommendations for QTL nomenclature.Horticulture research · 2020Review
- QTL mapping and genome-wide association study reveal two novel loci associated with green flesh color in cucumber.BMC plant biology · 2019Article
- Novel loci fsd6.1 and Csgl3 regulate ultra-high fruit spine density in cucumber.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Beyond Arabidopsis: Differential UV-B Response Mediated by UVR8 in Diverse Species.Frontiers in plant science · 2019Review
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- Mutations in CsPID encoding a Ser/Thr protein kinase are responsible for round leaf shape in cucumber (Cucumis sativus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat.BMC genomics · 2018Article
- Fine mapping identifies CsGCN5 encoding a histone acetyltransferase as putative candidate gene for tendril-less1 mutation (td-1) in cucumber.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- QTL mapping of domestication and diversifying selection related traits in round-fruited semi-wild Xishuangbanna cucumber (Cucumis sativus L. var. xishuangbannanesis).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
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Authors and funding
11 authors at 7 institutions in 3 countries.
Kailiang BoHorticulture Department, University of Wisconsin, Madison, Wisconsin 53706 (K.B., Y.P., Y.Wa., P.W.S., Y.We.); Horticulture College, Nanjing Agricultural University, Nanjing 210095, China (K.B., J.C.);Horticulture College, Northwest A&F University, Yangling 712100, China (H.W., Y.P., Y.L.);Division of Vegetable Science, Indian Agricultural Research Institute, New Delhi 10012, India (T.K.B.);Division of Crop Improvement, Indian Council of Agricultural Research-Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh 221305, India (S.P.);Beijing Vegetable Research Center and National Engineering Research Center for Vegetables, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097, China (C.W.); andVegetable Crops Research Unit, United States Department of Agriculture Agricultural Research Service, Madison, Wisconsin 53706 (P.W.S., Y.We.).
Hui WangHorticulture Department, University of Wisconsin, Madison, Wisconsin 53706 (K.B., Y.P., Y.Wa., P.W.S., Y.We.); Horticulture College, Nanjing Agricultural University, Nanjing 210095, China (K.B., J.C.);Horticulture College, Northwest A&F University, Yangling 712100, China (H.W., Y.P., Y.L.);Division of Vegetable Science, Indian Agricultural Research Institute, New Delhi 10012, India (T.K.B.);Division of Crop Improvement, Indian Council of Agricultural Research-Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh 221305, India (S.P.);Beijing Vegetable Research Center and National Engineering Research Center for Vegetables, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097, China (C.W.); andVegetable Crops Research Unit, United States Department of Agriculture Agricultural Research Service, Madison, Wisconsin 53706 (P.W.S., Y.We.).ORCID 0000-0002-6053-443X
Yupeng PanHorticulture Department, University of Wisconsin, Madison, Wisconsin 53706 (K.B., Y.P., Y.Wa., P.W.S., Y.We.); Horticulture College, Nanjing Agricultural University, Nanjing 210095, China (K.B., J.C.);Horticulture College, Northwest A&F University, Yangling 712100, China (H.W., Y.P., Y.L.);Division of Vegetable Science, Indian Agricultural Research Institute, New Delhi 10012, India (T.K.B.);Division of Crop Improvement, Indian Council of Agricultural Research-Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh 221305, India (S.P.);Beijing Vegetable Research Center and National Engineering Research Center for Vegetables, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097, China (C.W.); andVegetable Crops Research Unit, United States Department of Agriculture Agricultural Research Service, Madison, Wisconsin 53706 (P.W.S., Y.We.).ORCID 0000-0003-4662-601X
Tusar K BeheraHorticulture Department, University of Wisconsin, Madison, Wisconsin 53706 (K.B., Y.P., Y.Wa., P.W.S., Y.We.); Horticulture College, Nanjing Agricultural University, Nanjing 210095, China (K.B., J.C.);Horticulture College, Northwest A&F University, Yangling 712100, China (H.W., Y.P., Y.L.);Division of Vegetable Science, Indian Agricultural Research Institute, New Delhi 10012, India (T.K.B.);Division of Crop Improvement, Indian Council of Agricultural Research-Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh 221305, India (S.P.);Beijing Vegetable Research Center and National Engineering Research Center for Vegetables, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097, China (C.W.); andVegetable Crops Research Unit, United States Department of Agriculture Agricultural Research Service, Madison, Wisconsin 53706 (P.W.S., Y.We.).
Sudhakar PandeyHorticulture Department, University of Wisconsin, Madison, Wisconsin 53706 (K.B., Y.P., Y.Wa., P.W.S., Y.We.); Horticulture College, Nanjing Agricultural University, Nanjing 210095, China (K.B., J.C.);Horticulture College, Northwest A&F University, Yangling 712100, China (H.W., Y.P., Y.L.);Division of Vegetable Science, Indian Agricultural Research Institute, New Delhi 10012, India (T.K.B.);Division of Crop Improvement, Indian Council of Agricultural Research-Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh 221305, India (S.P.);Beijing Vegetable Research Center and National Engineering Research Center for Vegetables, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097, China (C.W.); andVegetable Crops Research Unit, United States Department of Agriculture Agricultural Research Service, Madison, Wisconsin 53706 (P.W.S., Y.We.).
Changlong WenHorticulture Department, University of Wisconsin, Madison, Wisconsin 53706 (K.B., Y.P., Y.Wa., P.W.S., Y.We.); Horticulture College, Nanjing Agricultural University, Nanjing 210095, China (K.B., J.C.);Horticulture College, Northwest A&F University, Yangling 712100, China (H.W., Y.P., Y.L.);Division of Vegetable Science, Indian Agricultural Research Institute, New Delhi 10012, India (T.K.B.);Division of Crop Improvement, Indian Council of Agricultural Research-Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh 221305, India (S.P.);Beijing Vegetable Research Center and National Engineering Research Center for Vegetables, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097, China (C.W.); andVegetable Crops Research Unit, United States Department of Agriculture Agricultural Research Service, Madison, Wisconsin 53706 (P.W.S., Y.We.).
Yuhui WangHorticulture Department, University of Wisconsin, Madison, Wisconsin 53706 (K.B., Y.P., Y.Wa., P.W.S., Y.We.); Horticulture College, Nanjing Agricultural University, Nanjing 210095, China (K.B., J.C.);Horticulture College, Northwest A&F University, Yangling 712100, China (H.W., Y.P., Y.L.);Division of Vegetable Science, Indian Agricultural Research Institute, New Delhi 10012, India (T.K.B.);Division of Crop Improvement, Indian Council of Agricultural Research-Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh 221305, India (S.P.);Beijing Vegetable Research Center and National Engineering Research Center for Vegetables, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097, China (C.W.); andVegetable Crops Research Unit, United States Department of Agriculture Agricultural Research Service, Madison, Wisconsin 53706 (P.W.S., Y.We.).
Philipp W SimonHorticulture Department, University of Wisconsin, Madison, Wisconsin 53706 (K.B., Y.P., Y.Wa., P.W.S., Y.We.); Horticulture College, Nanjing Agricultural University, Nanjing 210095, China (K.B., J.C.);Horticulture College, Northwest A&F University, Yangling 712100, China (H.W., Y.P., Y.L.);Division of Vegetable Science, Indian Agricultural Research Institute, New Delhi 10012, India (T.K.B.);Division of Crop Improvement, Indian Council of Agricultural Research-Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh 221305, India (S.P.);Beijing Vegetable Research Center and National Engineering Research Center for Vegetables, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097, China (C.W.); andVegetable Crops Research Unit, United States Department of Agriculture Agricultural Research Service, Madison, Wisconsin 53706 (P.W.S., Y.We.).
Yuhong LiHorticulture Department, University of Wisconsin, Madison, Wisconsin 53706 (K.B., Y.P., Y.Wa., P.W.S., Y.We.); Horticulture College, Nanjing Agricultural University, Nanjing 210095, China (K.B., J.C.);Horticulture College, Northwest A&F University, Yangling 712100, China (H.W., Y.P., Y.L.);Division of Vegetable Science, Indian Agricultural Research Institute, New Delhi 10012, India (T.K.B.);Division of Crop Improvement, Indian Council of Agricultural Research-Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh 221305, India (S.P.);Beijing Vegetable Research Center and National Engineering Research Center for Vegetables, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097, China (C.W.); andVegetable Crops Research Unit, United States Department of Agriculture Agricultural Research Service, Madison, Wisconsin 53706 (P.W.S., Y.We.).
Jinfeng ChenHorticulture Department, University of Wisconsin, Madison, Wisconsin 53706 (K.B., Y.P., Y.Wa., P.W.S., Y.We.); Horticulture College, Nanjing Agricultural University, Nanjing 210095, China (K.B., J.C.);Horticulture College, Northwest A&F University, Yangling 712100, China (H.W., Y.P., Y.L.);Division of Vegetable Science, Indian Agricultural Research Institute, New Delhi 10012, India (T.K.B.);Division of Crop Improvement, Indian Council of Agricultural Research-Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh 221305, India (S.P.);Beijing Vegetable Research Center and National Engineering Research Center for Vegetables, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097, China (C.W.); andVegetable Crops Research Unit, United States Department of Agriculture Agricultural Research Service, Madison, Wisconsin 53706 (P.W.S., Y.We.) yiqun.weng@wisc.edu jfchen@njau.edu.cn.ORCID 0000-0002-4690-6778
Yiqun WengHorticulture Department, University of Wisconsin, Madison, Wisconsin 53706 (K.B., Y.P., Y.Wa., P.W.S., Y.We.); Horticulture College, Nanjing Agricultural University, Nanjing 210095, China (K.B., J.C.);Horticulture College, Northwest A&F University, Yangling 712100, China (H.W., Y.P., Y.L.);Division of Vegetable Science, Indian Agricultural Research Institute, New Delhi 10012, India (T.K.B.);Division of Crop Improvement, Indian Council of Agricultural Research-Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh 221305, India (S.P.);Beijing Vegetable Research Center and National Engineering Research Center for Vegetables, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097, China (C.W.); andVegetable Crops Research Unit, United States Department of Agriculture Agricultural Research Service, Madison, Wisconsin 53706 (P.W.S., Y.We.) yiqun.weng@wisc.edu jfchen@njau.edu.cn.ORCID 0000-0001-9457-2234
Northwest A&F University · CNAgricultural Research Service · USUniversity of Wisconsin–Madison · USBeijing Academy of Agricultural and Forestry Sciences · CNIndian Agricultural Research Institute · INIndian Council of Agricultural Research · INNanjing Agricultural University · CN
Funding
No grant is acknowledged in the PubMed record.
Abstract
In Arabidopsis (Arabidopsis thaliana), the UVR8-mediated signaling pathway is employed to attain UVB protection and acclimation to deal with low-dosage UVB (LDUVB)-induced stresses. Here, we identified SHORT HYPOCOTYL1 (SH1) in cucumber (Cucumis sativus), which regulates LDUVB-dependent hypocotyl elongation by modulating the UVR8 signaling pathway. We showed that hypocotyl elongation in cucumbers carrying the recessive sh1 allele was LDUVB insensitive and that Sh1 encoded a human SMARCA3-like chromatin remodeling factor. The allele frequency and distribution pattern at this locus among natural populations supported the wild cucumber origin of sh1 for local adaptation, which was under selection during domestication. The cultivated cucumber carries predominantly the Sh1 allele; the sh1 allele is nearly fixed in the semiwild Xishuangbanna cucumber, and the wild cucumber population is largely at Hardy-Weinberg equilibrium for the two alleles. The SH1 protein sequence was highly conserved among eukaryotic organisms, but its regulation of hypocotyl elongation in cucumber seems to be a novel function. While Sh1 expression was inhibited by LDUVB, its transcript abundance was highly correlated with hypocotyl elongation rate and the expression level of cell-elongation-related genes. Expression profiling of key regulators in the UVR8 signaling pathway revealed significant differential expression of CsHY5 between two near isogenic lines of Sh1 Sh1 and CsHY5 acted antagonistically at transcriptional level. A working model was proposed in which Sh1 regulates LDUVB-dependent hypocotyl elongation in cucumber through changing the chromatin states and thus the accessibility of CsHY5 in the UVR8 signaling pathway to promoters of LDUVB-responsive genes for hypocotyl elongation.
Indexed as
Ultraviolet RaysBase SequenceChromatin Assembly and DisassemblyChromosome MappingChromosomes, PlantCloning, MolecularCucumis sativusDNA-Binding ProteinsGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGene FrequencyGenotypeHypocotylLinkage DisequilibriumPhylogenyDNA-Binding ProteinsHLTF protein, humanPlant ProteinsTranscription Factors
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