Evidence map›Paper›PMID 27558998›Full record

ArticleMicrobiology (Reading, England)2016

Characterization of a protein-protein interaction within the SigO-RsoA two-subunit σ factor: the σ70 region 2.3-like segment of RsoA mediates interaction with SigO.

Xiaowei Xue, Maria C Davis, Thomas Steeves, Adam Bishop, Jillian Breen, Allison MacEacheron, Christopher A Kesthely, FoSheng Hsu, Shawn R MacLellan

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Xiaowei XueDepartment of Biology, University of New Brunswick, Fredericton, NB, Canada.
Maria C DavisDepartment of Biology, University of New Brunswick, Fredericton, NB, Canada.
Thomas SteevesDepartment of Biology, University of New Brunswick, Fredericton, NB, Canada.
Adam BishopDepartment of Biology, University of New Brunswick, Fredericton, NB, Canada.
Jillian BreenDepartment of Biology, University of New Brunswick, Fredericton, NB, Canada.
Allison MacEacheronDepartment of Biology, University of New Brunswick, Fredericton, NB, Canada.
Christopher A KesthelyDepartment of Biology, University of New Brunswick, Fredericton, NB, Canada.
FoSheng HsuDepartment of Biology, University of New Brunswick, Fredericton, NB, Canada.
Shawn R MacLellanDepartment of Biology, University of New Brunswick, Fredericton, NB, Canada.
University of New Brunswick · CA

Funding

STRUCTURAL STUDIES OF BACILLUS SUBTILIS SIGMA FACTORSR01GM047446 · NIGMS · CORNELL UNIVERSITY ITHACA · PI HELMANN, JOHN D · 1992 to 2016
$6.7M
NIGMS NIH HHS R01 GM047446
6 · The paper itself

Abstract

σ factors are single subunit general transcription factors that reversibly bind core RNA polymerase and mediate gene-specific transcription in bacteria. Previously, an atypical two-subunit σ factor was identified that activates transcription from a group of related promoters in Bacillus subtilis. Both of the subunits, named SigO and RsoA, share primary sequence similarity with the canonical σ70 family of σ factors and interact with each other and with RNA polymerase subunits. Here we show that the σ70 region 2.3-like segment of RsoA is unexpectedly sufficient for interaction with the amino-terminus of SigO and the β' subunit. A mutational analysis of RsoA identified aromatic residues conserved amongst all RsoA homologues, and often amongst canonical σ factors, that are particularly important for the SigO-RsoA interaction. In a canonical σ factor, region 2.3 amino acids bind non-template strand DNA, trapping the promoter in a single-stranded state required for initiation of transcription. Accordingly, we speculate that RsoA region 2.3 protein-binding activity likely arose from a motif that, at least in its ancestral protein, participated in DNA-binding interactions.

Indexed as

Amino Acid SequenceBacillus subtilisBacterial ProteinsGene Expression Regulation, BacterialPromoter Regions, GeneticProtein BindingProtein SubunitsSequence AlignmentSigma FactorBacterial ProteinsProtein SubunitsSigma Factor

Identifiers

PMID27558998
PMCPMC5903212
OpenAlexW2512942679

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.