Evidence map›Paper›PMID 27558717›Full record

ArticleBiophysical journal2016

The Conformation of Interfacially Adsorbed Ranaspumin-2 Is an Arrested State on the Unfolding Pathway.

Ryan J Morris, Giovanni B Brandani, Vibhuti Desai, Brian O Smith, Marieke Schor, Cait E MacPhee

Abstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Langmuir : the ACS journal of surfaces and colloids · 2024
    Article
  2. Article
  3. Frog foams and natural protein surfactants.Colloids and surfaces. A, Physicochemical and engineering aspects · 2017
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ryan J MorrisSchool of Physics and Astronomy, University of Edinburgh, Edinburgh, UK.
Giovanni B BrandaniSchool of Physics and Astronomy, University of Edinburgh, Edinburgh, UK.
Vibhuti DesaiSchool of Life Sciences, University of Glasgow, Glasgow, UK.
Brian O SmithSchool of Life Sciences, University of Glasgow, Glasgow, UK.
Marieke SchorSchool of Physics and Astronomy, University of Edinburgh, Edinburgh, UK.
Cait E MacPheeSchool of Physics and Astronomy, University of Edinburgh, Edinburgh, UK. Electronic address: cait.macphee@ed.ac.uk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ranaspumin-2 (Rsn-2) is a surfactant protein found in the foam nests of the túngara frog. Previous experimental work has led to a proposed model of adsorption that involves an unusual clam-shell-like unhinging of the protein at an interface. Interestingly, there is no concomitant denaturation of the secondary structural elements of Rsn-2 with the large-scale transformation of its tertiary structure. In this work we use both experiment and simulation to better understand the driving forces underpinning this unusual process. We develop a modified Gō-model approach where we have included explicit representation of the side chains to realistically model the interaction between the secondary structure elements of the protein and the interface. Doing so allows for the study of the underlying energy landscape that governs the mechanism of Rsn-2 interfacial adsorption. Experimentally, we study targeted mutants of Rsn-2, using the Langmuir trough, pendant drop tensiometry, and circular dichroism, to demonstrate that the clam-shell model is correct. We find that Rsn-2 adsorption is in fact a two-step process: the hydrophobic N-terminal tail recruits the protein to the interface after which Rsn-2 undergoes an unfolding transition that maintains its secondary structure. Intriguingly, our simulations show that the conformation Rsn-2 adopts at an interface is an arrested state along the denaturation pathway. More generally, our computational model should prove a useful, and computationally efficient, tool in studying the dynamics and energetics of protein-interface interactions.

Indexed as

Protein UnfoldingAdsorptionAmphibian ProteinsModels, MolecularProtein ConformationSurface PropertiesThermodynamicsAmphibian Proteinsranaspumin-2 protein, Engystomops pustulosus

Identifiers

PMID27558717
PMCPMC5002068

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.