Evidence map›Paper›PMID 27558716›Full record

ArticleBiophysical journal2016

Nanosecond Dynamics of Gαi1 Bound to Nucleotides or Ric-8A, a Gα Chaperone with GEF Activity.

Labe A Black, Celestine J Thomas, Gwendolyn N Nix, Michelle C Terwilliger, Stephen R Sprang, J B Alexander Ross

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Labe A BlackCenter for Biomolecular Structure and Dynamics, University of Montana, Missoula, Montana; Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana.
Celestine J ThomasCenter for Biomolecular Structure and Dynamics, University of Montana, Missoula, Montana; Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana.
Gwendolyn N NixCenter for Biomolecular Structure and Dynamics, University of Montana, Missoula, Montana; Division of Biological Sciences, University of Montana, Missoula, Montana.
Michelle C TerwilligerCenter for Biomolecular Structure and Dynamics, University of Montana, Missoula, Montana; Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana.
Stephen R SprangCenter for Biomolecular Structure and Dynamics, University of Montana, Missoula, Montana; Division of Biological Sciences, University of Montana, Missoula, Montana. Electronic address: stephen.sprang@umontana.edu.
J B Alexander RossCenter for Biomolecular Structure and Dynamics, University of Montana, Missoula, Montana; Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana. Electronic address: sandy.ross@umontana.edu.
University of Montana · US

Funding

Surveillance genome sequencing to detect SARS-CoV-2 virus variants in MontanaP20GM103546 · NIGMS · UNIVERSITY OF MONTANA · PI BOWLER, BRUCE E · 2012 to 2021
$19.2M
Mechanism of G protein Activation by Ric-8A - competitive revision of R01GM105993R01GM105993 · NIGMS · UNIVERSITY OF MONTANA · PI SPRANG, STEPHEN R · 2013 to 2020
$2.8M
NIGMS NIH HHS P20 GM103546NIGMS NIH HHS R01 GM105993
6 · The paper itself

Abstract

Resistance to Inhibitors of Cholinesterase A (Ric-8A) is a 60-kDa cytosolic protein that has chaperone and guanine nucleotide exchange (GEF) activity toward heterotrimeric G protein α subunits of the i, q, and 12/13 classes, catalyzing the release of GDP from Gα and subsequent binding of GTP. In the absence of GTP or GTP analogs, and subsequent to GDP release, Gα forms a stable nucleotide-free complex with Ric-8A. In this study, time-resolved fluorescence anisotropy measurements were employed to detect local motions of Gαi1 labeled at selected sites with Alexa 488 (C5) fluorescent dye (Ax) in the GDP, GTPγS (collectively, GXP), and Ric-8A-bound states. Sites selected for Alexa 488 (C5) derivatization were in the α-helical domain (residue 106), the α-helical domain-Ras-like domain hinge (residue 63), Switch I (residue 180), Switch II (residue 209), Switch III (residue 238), the α4 helix (residue 305), and at the junction between the purine-binding subsite in the β6-α5 loop and the C-terminal α helix (residue 330). In the GXP-bound states, the Alexa fluorophore reports local motions with correlation times ranging from 1.0 to 1.8 ns. The dynamics at Ax180 is slower in Gαi1•GDP than in Gαi1•GTPγS. The reverse is true at Ax209. The order parameters, S(2), for Alexa probes at switch residues are high (0.78-0.88) in Gαi1•GDP and lower (0.67-0.75) in Gαi1•GTPγS, although in crystal structures, switch segments are more ordered in the latter. Local motions at Ax63, Ax180, Ax209, and Ax330 are all markedly slower (2.3-2.8 ns) in Gαi1:Ric-8A than in Gαi1•GXP, and only modest (± 0.1) differences in S(2) are observed at most sites in Gαi1:Ric-8A relative to Gαi1•GXP. The slow dynamics suggests long-range correlated transitions within an ensemble of states and, particularly in the hinge and switch segments that make direct contact with Ric-8A. Induction of Gαi1 structural heterogeneity by Ric-8A provides a mechanism for nucleotide release.

Indexed as

AnimalsGTP-Binding Protein alpha SubunitsGuanine Nucleotide Exchange FactorsKineticsModels, MolecularNuclear ProteinsNucleotidesProtein BindingProtein Conformation, alpha-HelicalProtein Structure, TertiaryRatsGTP-Binding Protein alpha SubunitsGuanine Nucleotide Exchange FactorsNuclear ProteinsNucleotidesRic8a protein, rat

Identifiers

PMID27558716
PMCPMC5002080
OpenAlexW2510438820

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.