Evidence map›Paper›PMID 27558427›Full record

ArticleJournal of virology2016

Glycan Specificity of P[19] Rotavirus and Comparison with Those of Related P Genotypes.

Yang Liu, Theresa A Ramelot, Pengwei Huang, Yan Liu, Zhen Li, Ten Feizi, Weiming Zhong, Fang-Tzy Wu, Ming Tan, Michael A Kennedy and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
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  10. The αTSR Domain ofInternational journal of nanomedicine · 2023
    Article
  11. Article
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  13. Article
  14. Structural basis of P[II] rotavirus evolution and host ranges under selection of histo-blood group antigens.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Review
  16. Structural Basis of Glycan Recognition of Rotavirus.Frontiers in molecular biosciences · 2021
    Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Yang LiuDivision of Infectious Diseases, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Theresa A RamelotDepartment of Chemistry and Biochemistry, Miami University, Oxford, Ohio, USA.
Pengwei HuangDivision of Infectious Diseases, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Yan LiuGlycosciences Laboratory, Department of Medicine, Imperial College London, London, United Kingdom.
Zhen LiGlycosciences Laboratory, Department of Medicine, Imperial College London, London, United Kingdom.
Ten FeiziGlycosciences Laboratory, Department of Medicine, Imperial College London, London, United Kingdom.
Weiming ZhongDivision of Infectious Diseases, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Fang-Tzy WuCenter for Research, Diagnostics and Vaccine Development, Centers for Disease Control, Taipei, Taiwan.
Ming TanDivision of Infectious Diseases, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, USA.
Michael A KennedyDepartment of Chemistry and Biochemistry, Miami University, Oxford, Ohio, USA.
Xi JiangDivision of Infectious Diseases, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, USA Jason.jiang@cchmc.org.
Cincinnati Children's Hospital Medical Center · USImperial College London · GBMiami University · USDevelopment Center for Biotechnology · TW

Funding

Norwalk-like Viruses and Their ReceptorsR01AI055649 · NIAID · CINCINNATI CHILDRENS HOSP MED CTR · PI JIANG, XI · 2005 to 2009
$1.4M
NIAID NIH HHS R01 AI055649Wellcome Trust
6 · The paper itself

Abstract

The P[19] genotype belongs to the P[II] genogroup of group A rotaviruses (RVs). However, unlike the other P[II] RVs, which mainly infect humans, P[19] RVs commonly infect animals (pigs), making P[19] unique for the study of RV diversity and host ranges. Through in vitro binding assays and saturation transfer difference (STD) nuclear magnetic resonance (NMR), we found that P[19] could bind mucin cores 2, 4, and 6, as well as type 1 histo-blood group antigens (HBGAs). The common sequences of these glycans serve as minimal binding units, while additional residues, such as the A, B, H, and Lewis epitopes of the type 1 HBGAs, can further define the binding outcomes and therefore likely the host ranges for P[19] RVs. This complex binding property of P[19] is shared with the other three P[II] RVs (P[4], P[6], and P[8]) in that all of them recognized the type 1 HBGA precursor, although P[4] and P[8], but not P[6], also bind to mucin cores. Moreover, while essential for P[4] and P[8] binding, the addition of the Lewis epitope blocked P[6] and P[19] binding to type 1 HBGAs. Chemical-shift NMR of P[19] VP8* identified a ligand binding interface that has shifted away from the known RV P-genotype binding sites but is conserved among all P[II] RVs and two P[I] RVs (P[10] and P[12]), suggesting an evolutionary connection among these human and animal RVs. Taken together, these data are important for hypotheses on potential mechanisms for RV diversity, host ranges, and cross-species transmission. IMPORTANCE: In this study, we found that our P[19] strain and other P[II] RVs recognize mucin cores and the type 1 HBGA precursors as the minimal functional units and that additional saccharides adjacent to these units can alter binding outcomes and thereby possibly host ranges. These data may help to explain why some P[II] RVs, such as P[6] and P[19], commonly infect animals but rarely humans, while others, such as the P[4] and P[8] RVs, mainly infect humans and are predominant over other P genotypes. Elucidation of the molecular bases for strain-specific host ranges and cross-species transmission of these human and animal RVs is important to understand RV epidemiology and disease burden, which may impact development of control and prevention strategies against RV gastroenteritis.

Indexed as

AnimalsBinding SitesBlood Group AntigensEpitopesGastroenteritisGenotypeHost SpecificityHumansMucinsPolysaccharidesProtein BindingRotavirusRotavirus InfectionsSwineViral Nonstructural ProteinsVirus AttachmentBlood Group AntigensEpitopesMucinsPolysaccharidesViral Nonstructural Proteins

Identifiers

PMID27558427
PMCPMC5068545
OpenAlexW2507349326

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.