Evidence map›Paper›PMID 27558399›Full record

ArticleScientific reports2016

Recent evolution of the salivary mucin MUC7.

Duo Xu, Pavlos Pavlidis, Supaporn Thamadilok, Emilie Redwood, Sara Fox, Ran Blekhman, Stefan Ruhl, Omer Gokcumen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 39 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Frontiers in cellular and infection microbiology · 2022
    Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Duo XuDepartment of Biological Sciences, State University of New York at Buffalo, New York 14260, USA.
Pavlos PavlidisInstitute of Computer Science (ICS), Foundation of Research and Technology-Hellas, Heraklion, Crete, Greece.
Supaporn ThamadilokDepartment of Oral Biology, School of Dental Medicine, State University of New York at Buffalo, New York 14214, USA.
Emilie RedwoodDepartment of Biological Sciences, State University of New York at Buffalo, New York 14260, USA.
Sara FoxDepartment of Biological Sciences, State University of New York at Buffalo, New York 14260, USA.
Ran BlekhmanDepartment of Genetics, Cell Biology, and Development, University of Minnesota, Twin Cities, Minnesota 55455, USA.
Stefan RuhlDepartment of Oral Biology, School of Dental Medicine, State University of New York at Buffalo, New York 14214, USA.
Omer GokcumenDepartment of Biological Sciences, State University of New York at Buffalo, New York 14260, USA.
University at Buffalo, State University of New York · USFoundation for Research and Technology Hellas · GRUniversity of Minnesota · US

Funding

Microbial Recognition of Sialic Acid Diversity in the Salivary ProteomeR01DE019807 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI RUHL, STEFAN HANS-KLAUS · 2010 to 2022
$4.7M
MINING THE ORAL MICROBIOME FOR NOVEL GLYCAN-BINDING MOLECULESR21DE025826 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI RUHL, STEFAN HANS-KLAUS, SULLAM, PAUL M. · 2015 to 2016
$638k
NIDCR NIH HHS R01 DE019807NIDCR NIH HHS R21 DE025826
6 · The paper itself

Abstract

Genomic structural variants constitute the majority of variable base pairs in primate genomes and affect gene function in multiple ways. While whole gene duplications and deletions are relatively well-studied, the biology of subexonic (i.e., within coding exon sequences), copy number variation remains elusive. The salivary MUC7 gene provides an opportunity for studying such variation, as it harbors copy number variable subexonic repeat sequences that encode for densely O-glycosylated domains (PTS-repeats) with microbe-binding properties. To understand the evolution of this gene, we analyzed mammalian and primate genomes within a comparative framework. Our analyses revealed that (i) MUC7 has emerged in the placental mammal ancestor and rapidly gained multiple sites for O-glycosylation; (ii) MUC7 has retained its extracellular activity in saliva in placental mammals; (iii) the anti-fungal domain of the protein was remodified under positive selection in the primate lineage; and (iv) MUC7 PTS-repeats have evolved recurrently and under adaptive constraints. Our results establish MUC7 as a major player in salivary adaptation, likely as a response to diverse pathogenic exposure in primates. On a broader scale, our study highlights variable subexonic repeats as a primary source for modular evolutionary innovation that lead to rapid functional adaptation.

Indexed as

Evolution, MolecularAlgorithmsAnimalsBinding SitesBiological EvolutionChromosomesDNA Copy Number VariationsGene Expression ProfilingGenomicsGenotypeGlycosylationGorilla gorillaHumansMammalsModels, GeneticMucinsMUC7 protein, humanMucinsSalivary Proteins and Peptides

Identifiers

PMID27558399
PMCPMC4997351
OpenAlexW2510383945

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.