Evidence map›Paper›PMID 27557948›Full record

ArticleBMC evolutionary biology2016

Non-excitable fluorescent protein orthologs found in ctenophores.

Warren R Francis, Lynne M Christianson, Meghan L Powers, Christine E Schnitzler, Steven H D Haddock

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.0field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Warren R FrancisMonterey Bay Aquarium Research Institute, 7700 Sandholdt Rd., 95039, Moss Landing, USA.
Lynne M ChristiansonMonterey Bay Aquarium Research Institute, 7700 Sandholdt Rd., 95039, Moss Landing, USA.
Meghan L PowersMonterey Bay Aquarium Research Institute, 7700 Sandholdt Rd., 95039, Moss Landing, USA.
Christine E SchnitzlerNational Human Genome Research Institute, National Institutes of Health, 50 South Drive, Bethesda, 20892, USA.
Steven H D HaddockMonterey Bay Aquarium Research Institute, 7700 Sandholdt Rd., 95039, Moss Landing, USA. haddock@mbari.org.
Monterey Bay Aquarium Research Institute · USNational Institutes of Health · US

Funding

Genetically encoded luminescence for in vivo imagingR01GM087198 · NIGMS · MONTEREY BAY AQUARIUM RESEARCH INST · PI HADDOCK, STEVEN · 2009 to 2012
$1.4M
NIGMS NIH HHS R01 GM087198
6 · The paper itself

Abstract

backgroundFluorescent proteins are optically active proteins found across many clades in metazoans. A fluorescent protein was recently identified in a ctenophore, but this has been suggested to derive from a cnidarian, raising again the question of origins of this group of proteins.

resultsThrough analysis of transcriptome data from 30 ctenophores, we identified a member of an orthologous group of proteins similar to fluorescent proteins in each of them, as well as in the genome of Mnemiopsis leidyi. These orthologs lack canonical residues involved in chromophore formation, suggesting another function.

conclusionsThe phylogenetic position of the ctenophore protein family among fluorescent proteins suggests that this gene was present in the common ancestor of all ctenophores and that the fluorescent protein previously found in a ctenophore actually derives from a siphonophore.

Indexed as

Amino Acid SequenceAnimalsCtenophoraGenomeLuminescent ProteinsPhylogenyTranscriptomeLuminescent ProteinsCtenophoreFluorescenceFluorescent proteinHaeckeliaSiphonophoreTranscriptome

Identifiers

PMID27557948
PMCPMC4997694
OpenAlexW2507217460

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.