Evidence map›Paper›PMID 27557478›Full record

ArticlePlant biotechnology journal2017

A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution.

James K Hane, Yao Ming, Lars G Kamphuis, Matthew N Nelson, Gagan Garg, Craig A Atkins, Philipp E Bayer, Armando Bravo, Scott Bringans, Steven Cannon and 14 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
57.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 217 citations in OpenAlex.

  1. Article
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  11. Legume Allergens Pea, Chickpea, Lentil, Lupine and Beyond.Current allergy and asthma reports · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Analysis of lncRNAs inNon-coding RNA · 2023
    Article
  17. Regulatory Effects of ABA and GA on the Expression of Conglutin Genes andInternational journal of molecular sciences · 2023
    Article
  18. Article
  19. Article
  20. Review

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 11 institutions in 3 countries.

James K HaneCSIRO Agriculture, Wembley, WA, Australia.
Yao MingDepartment of Plant and Animal Genome Research, Beijing Genome Institute, Shenzhen, China.
Lars G KamphuisCSIRO Agriculture, Wembley, WA, Australia.
Matthew N NelsonUWA Institute of Agriculture, University of Western Australia, Crawley, WA, Australia.
Gagan GargCSIRO Agriculture, Wembley, WA, Australia.
Craig A AtkinsUWA Institute of Agriculture, University of Western Australia, Crawley, WA, Australia.
Philipp E BayerSchool of Plant Biology, University of Western Australia, Crawley, WA, Australia.
Armando BravoBoyce Thompson Institute for Plant Research, Ithaca, NY, USA.
Scott BringansProteomics International, Nedlands, WA, Australia.
Steven CannonUSDA-ARS Corn Insects and Crop Genetics Research Unit, Crop Genome Informatics Lab, Iowa State University, Ames, IA, USA.
David EdwardsSchool of Plant Biology, University of Western Australia, Crawley, WA, Australia.
Rhonda FoleyCSIRO Agriculture, Wembley, WA, Australia.
Ling-Ling GaoCSIRO Agriculture, Wembley, WA, Australia.
Maria J HarrisonBoyce Thompson Institute for Plant Research, Ithaca, NY, USA.
Wei HuangDepartment of Agronomy, Iowa State University, Ames, IA, USA.
Bhavna HurgobinSchool of Plant Biology, University of Western Australia, Crawley, WA, Australia.
Sean LiData61, CSIRO, Canberra, ACT, Australia.
Cheng-Wu LiuJohn Innes Centre, Norwich Research Park, Norfolk, UK.
Annette McGrathData61, CSIRO, Canberra, ACT, Australia.
Grant MorahanCentre for Diabetes Research, University of Western Australia, Crawley, WA, Australia.
Jeremy MurrayData61, CSIRO, Canberra, ACT, Australia.
James WellerSchool of Biological Sciences, University of Tasmania, Hobart, TAS, Australia.
Jianbo JianDepartment of Plant and Animal Genome Research, Beijing Genome Institute, Shenzhen, China.
Karam B SinghCSIRO Agriculture, Wembley, WA, Australia.
Commonwealth Scientific and Industrial Research Organisation · AUUniversity of Western Australia · AUData61 · AUIowa State University · USUniversity of Queensland · AUCornell University · USCurtin University · AUDigital Proteomics (United States) · USIthaca College · USNorwich Research Park · GBUniversity of Tasmania · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lupins are important grain legume crops that form a critical part of sustainable farming systems, reducing fertilizer use and providing disease breaks. It has a basal phylogenetic position relative to other crop and model legumes and a high speciation rate. Narrow-leafed lupin (NLL; Lupinus angustifolius L.) is gaining popularity as a health food, which is high in protein and dietary fibre but low in starch and gluten-free. We report the draft genome assembly (609 Mb) of NLL cultivar Tanjil, which has captured >98% of the gene content, sequences of additional lines and a dense genetic map. Lupins are unique among legumes and differ from most other land plants in that they do not form mycorrhizal associations. Remarkably, we find that NLL has lost all mycorrhiza-specific genes, but has retained genes commonly required for mycorrhization and nodulation. In addition, the genome also provided candidate genes for key disease resistance and domestication traits. We also find evidence of a whole-genome triplication at around 25 million years ago in the genistoid lineage leading to Lupinus. Our results will support detailed studies of legume evolution and accelerate lupin breeding programmes.

Indexed as

Disease ResistanceGenome, PlantLupinusPlant ProteinsPolyploidySyntenyPlant Proteinsflowering time genesGenistoidsLegume comparative genomicspolyploidysyntenywhole-genome assembly

Identifiers

PMID27557478
PMCPMC5316927
OpenAlexW2508114195

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.