Evidence map›Paper›PMID 27556902›Full record

ArticleChembiochem : a European journal of chemical biology2016

Mechanism of Error-Free Bypass of the Environmental Carcinogen N-(2'-Deoxyguanosin-8-yl)-3-aminobenzanthrone Adduct by Human DNA Polymerase η.

Amritraj Patra, Dustin A Politica, Arindom Chatterjee, E John Tokarsky, Zucai Suo, Ashis K Basu, Michael P Stone, Martin Egli

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Amritraj PatraDepartment of Biochemistry, Vanderbilt University, School of Medicine, 868A Robinson Research Building, Nashville, TN, 37232, USA.
Dustin A PoliticaDepartment of Chemistry, Vanderbilt University, College of Arts & Science, Station B, Box 1822, Nashville, TN, 37235, USA.
Arindom ChatterjeeDepartment of Chemistry, University of Connecticut, 55 North Eagleville Rd, Storrs, CT, 06269, USA.
E John TokarskyDepartment of Chemistry and Biochemistry, Ohio State University, 484 West 12th Avenue, Columbus, OH, 43210, USA.
Zucai SuoDepartment of Chemistry and Biochemistry, Ohio State University, 484 West 12th Avenue, Columbus, OH, 43210, USA.
Ashis K BasuDepartment of Chemistry, University of Connecticut, 55 North Eagleville Rd, Storrs, CT, 06269, USA.
Michael P StoneDepartment of Chemistry, Vanderbilt University, College of Arts & Science, Station B, Box 1822, Nashville, TN, 37235, USA. michael.p.stone@vanderbilt.edu.
Martin EgliDepartment of Biochemistry, Vanderbilt University, School of Medicine, 868A Robinson Research Building, Nashville, TN, 37232, USA. martin.egli@vanderbilt.edu.

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI STACIE B DUSETZINA · 1995 to 2026
$172.8M
Synthetic Approaches to Carcinogen-Linked OligonucleotidesP01CA160032 · NCI · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 2012 to 2022
$14.0M
SYNTHETIC APPROACHES TO PAH-ADDUCTED NUCLEOTIDESP01ES005355 · NIEHS · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 1991 to 2010
$13.4M
DNA Adduct-Induced MutagenesisR01CA055678 · NCI · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 1992 to 2016
$4.0M
Genotoxicity and Repair of Tobacco-Specific Nitrosamine DNA AdductsR01ES021762 · NIEHS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI SPRATT, THOMAS E · 2012 to 2022
$3.7M
BIOLOGICAL EFFECTS OF DNA ADDUCTS FORMED BY NITROPYRENESR01ES009127 · NIEHS · UNIVERSITY OF CONNECTICUT STORRS · PI BASU, ASHIS K, SUO, ZUCAI · 1998 to 2014
$3.5M
DNA ADDUCTS OF STYRENE AND OTHER VINYL MONOMERSR01ES005509 · NIEHS · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 1991 to 2011
$3.4M
NCI NIH HHS P01 CA160032NCI NIH HHS P30 CA068485NCI NIH HHS R01 CA055678NIEHS NIH HHS P01 ES005355NIEHS NIH HHS R01 ES005509NIEHS NIH HHS R01 ES009127NIEHS NIH HHS R01 ES021762
6 · The paper itself

Abstract

The environmental pollutant 3-nitrobenzanthrone produces bulky aminobenzanthrone (ABA) DNA adducts with both guanine and adenine nucleobases. A major product occurs at the C8 position of guanine (C8-dG-ABA). These adducts present a strong block to replicative polymerases but, remarkably, can be bypassed in a largely error-free manner by the human Y-family polymerase η (hPol η). Here, we report the crystal structure of a ternary Pol⋅DNA⋅dCTP complex between a C8-dG-ABA-containing template:primer duplex and hPol η. The complex was captured at the insertion stage and provides crucial insight into the mechanism of error-free bypass of this bulky lesion. Specifically, bypass involves accommodation of the ABA moiety inside a hydrophobic cleft to the side of the enzyme active site and formation of an intra-nucleotide hydrogen bond between the phosphate and ABA amino moiety, allowing the adducted guanine to form a standard Watson-Crick pair with the incoming dCTP.

Indexed as

Benz(a)AnthracenesDeoxyguanosineDNA AdductsDNA-Directed DNA PolymeraseHumansModels, MolecularMolecular StructureY-Family DNA PolymerasesBenz(a)AnthracenesDeoxyguanosineDNA AdductsDNA-Directed DNA PolymeraseN-(2'-deoxyguanosin-8-yl)-3-aminobenzanthroneRad30 proteinY-Family DNA PolymerasesDNA damageDNA polymerasesenvironmental carcinogenlesion bypassnitrobenzanthroneX-ray crystallography

Identifiers

PMID27556902
PMCPMC5172388

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.