Evidence map›Paper›PMID 27555519›Full record

ArticleNature communications2016

A rheostat mechanism governs the bifurcation of carbon flux in mycobacteria.

Paul Murima, Michael Zimmermann, Tarun Chopra, Florence Pojer, Giulia Fonti, Matteo Dal Peraro, Sylvie Alonso, Uwe Sauer, Kevin Pethe, John D McKinney

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Study on the phosphorylation of NADJournal of enzyme inhibition and medicinal chemistry · 2025
    Article
  3. Article
  4. Review
  5. Two Different Isocitrate Dehydrogenases fromInternational journal of molecular sciences · 2023
    Article
  6. The Native Microbiome MemberMetabolites · 2023
    Article
  7. Role of MHC class I pathways inFrontiers in cellular and infection microbiology · 2023
    Review
  8. Article
  9. Article
  10. Engineering the glyoxylate cycle for chemical bioproduction.Frontiers in bioengineering and biotechnology · 2022
    Review
  11. Regulation of theJournal of bacteriology · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Glyoxylate detoxification is an essential function of malate synthase required for carbon assimilation inProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Paul MurimaSchool of Life Sciences, Swiss Federal Institute of Technology in Lausanne (EPFL), CH-1015 Lausanne, Switzerland.
Michael ZimmermannInstitute of Molecular Systems Biology, Swiss Federal Institute of Technology in Zürich (ETHZ), CH-8093 Zürich, Switzerland.ORCID 0000-0002-5797-3589
Tarun ChopraSchool of Life Sciences, Swiss Federal Institute of Technology in Lausanne (EPFL), CH-1015 Lausanne, Switzerland.
Florence PojerProtein Crystallography Platform, Swiss Federal Institute of Technology in Lausanne (EPFL), CH-1015 Lausanne, Switzerland.
Giulia FontiSchool of Life Sciences, Swiss Federal Institute of Technology in Lausanne (EPFL), CH-1015 Lausanne, Switzerland.
Matteo Dal PeraroSchool of Life Sciences, Swiss Federal Institute of Technology in Lausanne (EPFL), CH-1015 Lausanne, Switzerland.
Sylvie AlonsoDepartment of Microbiology, Yong Loo Lin School of Medicine and Immunology Programme, Life Sciences Institute, National University of Singapore, Singapore 117456, Singapore.
Uwe SauerInstitute of Molecular Systems Biology, Swiss Federal Institute of Technology in Zürich (ETHZ), CH-8093 Zürich, Switzerland.
Kevin PetheLee Kong Chian School of Medicine and School of Biological Sciences, Nanyang Technological University, 59 Nanyang Drive, Singapore 636 921, Singapore.
John D McKinneySchool of Life Sciences, Swiss Federal Institute of Technology in Lausanne (EPFL), CH-1015 Lausanne, Switzerland.
École Polytechnique Fédérale de Lausanne · CHETH Zurich · CHNanyang Technological University · SGNational University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fatty acid metabolism is an important feature of the pathogenicity of Mycobacterium tuberculosis during infection. Consumption of fatty acids requires regulation of carbon flux bifurcation between the oxidative TCA cycle and the glyoxylate shunt. In Escherichia coli, flux bifurcation is regulated by phosphorylation-mediated inhibition of isocitrate dehydrogenase (ICD), a paradigmatic example of post-translational mechanisms governing metabolic fluxes. Here, we demonstrate that, in contrast to E. coli, carbon flux bifurcation in mycobacteria is regulated not by phosphorylation but through metabolic cross-activation of ICD by glyoxylate, which is produced by the glyoxylate shunt enzyme isocitrate lyase (ICL). This regulatory circuit maintains stable partitioning of fluxes, thus ensuring a balance between anaplerosis, energy production, and precursor biosynthesis. The rheostat-like mechanism of metabolite-mediated control of flux partitioning demonstrates the importance of allosteric regulation during metabolic steady-state. The sensitivity of this regulatory mechanism to perturbations presents a potentially attractive target for chemotherapy.

Indexed as

Carbon CycleBacterial ProteinsCarbonCitric Acid CycleFatty AcidsGlyoxylatesIsocitrate DehydrogenaseIsocitrate LyaseKineticsModels, BiologicalMycobacteriumSpecies SpecificityBacterial ProteinsCarbonFatty AcidsGlyoxylatesglyoxylic acidIsocitrate DehydrogenaseIsocitrate Lyase

Identifiers

PMID27555519
PMCPMC4999502
OpenAlexW2511827017

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.