Evidence map›Paper›PMID 27555327›Full record

ArticleThe Journal of biological chemistry2016

Structural and Functional Basis for Lipid Synergy on the Activity of the Antibacterial Peptide ABC Transporter McjD.

Shahid Mehmood, Valentina Corradi, Hassanul G Choudhury, Rohanah Hussain, Patrick Becker, Danny Axford, Severine Zirah, Sylvie Rebuffat, D Peter Tieleman, Carol V Robinson and 1 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
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  4. Structure of the human respiratory complex II.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. A molecular switch controls the impact of cholesterol on a Kir channel.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Review
  7. Article
  8. Review
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  10. Review
  11. Review
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  13. Article
  14. Article
  15. Article
  16. N-glycan microheterogeneity regulates interactions of plasma proteins.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Shahid MehmoodFrom the Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom.
Valentina Corradithe Centre for Molecular Simulation and Department of Biological Sciences, University of Calgary, Calgary, Alberta T2N 1N4, Canada.
Hassanul G Choudhurythe Department of Life Sciences, Imperial College London, South Kensington, London SW7 2AZ, United Kingdom.
Rohanah HussainDiamond Light Source, Harwell Science and Innovation Campus, Oxfordshire, OX11 0DE, United Kingdom.
Patrick Beckerthe Department of Life Sciences, Imperial College London, South Kensington, London SW7 2AZ, United Kingdom.
Danny AxfordDiamond Light Source, Harwell Science and Innovation Campus, Oxfordshire, OX11 0DE, United Kingdom.
Severine Zirahthe Communication Molecules and Adaptation of Microorganisms Laboratory (MCAM, UMR 7245 CNRS-MNHN), Sorbonne Universités, Muséum National d'Histoire Naturelle, Centre National de la Recherche Scientifique, CP 54, 57 Rue Cuvier, 75005 Paris, France.
Sylvie Rebuffatthe Communication Molecules and Adaptation of Microorganisms Laboratory (MCAM, UMR 7245 CNRS-MNHN), Sorbonne Universités, Muséum National d'Histoire Naturelle, Centre National de la Recherche Scientifique, CP 54, 57 Rue Cuvier, 75005 Paris, France.
D Peter Tielemanthe Centre for Molecular Simulation and Department of Biological Sciences, University of Calgary, Calgary, Alberta T2N 1N4, Canada.
Carol V RobinsonFrom the Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom, carol.robinson@chem.ox.ac.uk.
Konstantinos Beisthe Department of Life Sciences, Imperial College London, South Kensington, London SW7 2AZ, United Kingdom, kbeis@imperial.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council BB/H01778X/1Medical Research Council G1000819Medical Research Council MR/N020413/1Wellcome Trust
6 · The paper itself

Abstract

The lipid bilayer is a dynamic environment that consists of a mixture of lipids with different properties that regulate the function of membrane proteins; these lipids are either annular, masking the protein hydrophobic surface, or specific lipids, essential for protein function. In this study, using tandem mass spectrometry, we have identified specific lipids associated with the Escherichia coli ABC transporter McjD, which translocates the antibacterial peptide MccJ25. Using non-denaturing mass spectrometry, we show that McjD in complex with MccJ25 survives the gas phase. Partial delipidation of McjD resulted in reduced ATPase activity and thermostability as shown by circular dichroism, both of which could be restored upon addition of defined E. coli lipids. We have resolved a phosphatidylglycerol lipid associated with McjD at 3.4 Å resolution, whereas molecular dynamic simulations carried out in different lipid environments assessed the binding of specific lipids to McjD. Combined, our data show a synergistic effect of zwitterionic and negatively charged lipids on the activity of McjD; the zwitterionic lipids provide structural stability to McjD, whereas the negatively charged lipids are essential for its function.

Indexed as

Anti-Bacterial AgentsATP-Binding Cassette TransportersBacteriocinsEscherichia coliEscherichia coli ProteinsMass SpectrometryMolecular Dynamics SimulationPhosphatidylglycerolsProtein DomainsStructure-Activity RelationshipAnti-Bacterial AgentsATP-Binding Cassette TransportersBacteriocinsEscherichia coli ProteinsMcjD protein, E colimicrocinPhosphatidylglycerolsABC transportercircular dichroism (CD)delipidationlipidmembrane proteinmembrane transportmolecular dynamicsnon-denaturing mass spectrometrystructural biologystructure-function

Identifiers

PMID27555327
PMCPMC5076835

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.