Evidence map›Paper›PMID 27551343›Full record

ArticleComparative cytogenetics2016

Differential repetitive DNA composition in the centromeric region of chromosomes of Amazonian lizard species in the family Teiidae.

Natalia D M Carvalho, Edson Carmo, Rogerio O Neves, Carlos Henrique Schneider, Maria Claudia Gross

Open access · goldAbstract read
In one paragraph

Article in Comparative cytogenetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Natalia D M CarvalhoLaboratório de Citogenômica Animal, Universidade Federal do Amazonas, Instituto de Ciências Biológicas, Estrada do Contorno 3000, Aleixo, CEP 69077-000 - Manaus, AM - Brazil.
Edson CarmoLaboratório de Tecnologia de DNA, Universidade Federal do Amazonas, Instituto de Ciências Biológicas, Estrada do Contorno 3000, Aleixo, CEP 69077-000 - Manaus, AM - Brazil.
Rogerio O NevesLaboratório de Tecnologia de DNA, Universidade Federal do Amazonas, Instituto de Ciências Biológicas, Estrada do Contorno 3000, Aleixo, CEP 69077-000 - Manaus, AM - Brazil.
Carlos Henrique SchneiderLaboratório de Citogenômica Animal, Universidade Federal do Amazonas, Instituto de Ciências Biológicas, Estrada do Contorno 3000, Aleixo, CEP 69077-000 - Manaus, AM - Brazil.
Maria Claudia GrossLaboratório de Citogenômica Animal, Universidade Federal do Amazonas, Instituto de Ciências Biológicas, Estrada do Contorno 3000, Aleixo, CEP 69077-000 - Manaus, AM - Brazil.
Universidade Federal do Amazonas · BRInstituto Federal do Amazonas · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Differences in heterochromatin distribution patterns and its composition were observed in Amazonian teiid species. Studies have shown repetitive DNA harbors heterochromatic blocks which are located in centromeric and telomeric regions in Ameiva ameiva (Linnaeus, 1758), Kentropyx calcarata (Spix, 1825), Kentropyx pelviceps (Cope, 1868), and Tupinambis teguixin (Linnaeus, 1758). In Cnemidophorus sp.1, repetitive DNA has multiple signals along all chromosomes. The aim of this study was to characterize moderately and highly repetitive DNA sequences by C ot1-DNA from Ameiva ameiva and Cnemidophorus sp.1 genomes through cloning and DNA sequencing, as well as mapping them chromosomally to better understand its organization and genome dynamics. The results of sequencing of DNA libraries obtained by C ot1-DNA showed that different microsatellites, transposons, retrotransposons, and some gene families also comprise the fraction of repetitive DNA in the teiid species. FISH using C ot1-DNA probes isolated from both Ameiva ameiva and Cnemidophorus sp.1 showed these sequences mainly located in heterochromatic centromeric, and telomeric regions in Ameiva ameiva, Kentropyx calcarata, Kentropyx pelviceps, and Tupinambis teguixin chromosomes, indicating they play structural and functional roles in the genome of these species. In Cnemidophorus sp.1, C ot1-DNA probe isolated from Ameiva ameiva had multiple interstitial signals on chromosomes, whereas mapping of C ot1-DNA isolated from the Ameiva ameiva and Cnemidophorus sp.1 highlighted centromeric regions of some chromosomes. Thus, the data obtained showed that many repetitive DNA classes are part of the genome of Ameiva ameiva, Cnemidophorus sp.1, Kentroyx calcarata, Kentropyx pelviceps, and Tupinambis teguixin, and these sequences are shared among the analyzed teiid species, but they were not always allocated at the same chromosome position.

Indexed as

centromereCot1-DNAFISHheterochromatintelomere

Identifiers

PMID27551343
PMCPMC4977797
OpenAlexW2334678896

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.