Evidence map›Paper›PMID 27551288›Full record

ArticleFrontiers in plant science2016

High-Throughput Sequencing Reveals Single Nucleotide Variants in Longer-Kernel Bread Wheat.

Feng Chen, Zibo Zhu, Xiaobian Zhou, Yan Yan, Zhongdong Dong, Dangqun Cui

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.1field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Feng ChenNational Key Laboratory of Wheat and Maize Crop, Collaborative Innovation Center of Henan Grain Crops, Agronomy College, Henan Agricultural University Zhengzhou, China.
Zibo ZhuNational Key Laboratory of Wheat and Maize Crop, Collaborative Innovation Center of Henan Grain Crops, Agronomy College, Henan Agricultural University Zhengzhou, China.
Xiaobian ZhouNational Key Laboratory of Wheat and Maize Crop, Collaborative Innovation Center of Henan Grain Crops, Agronomy College, Henan Agricultural University Zhengzhou, China.
Yan YanNational Key Laboratory of Wheat and Maize Crop, Collaborative Innovation Center of Henan Grain Crops, Agronomy College, Henan Agricultural University Zhengzhou, China.
Zhongdong DongNational Key Laboratory of Wheat and Maize Crop, Collaborative Innovation Center of Henan Grain Crops, Agronomy College, Henan Agricultural University Zhengzhou, China.
Dangqun CuiNational Key Laboratory of Wheat and Maize Crop, Collaborative Innovation Center of Henan Grain Crops, Agronomy College, Henan Agricultural University Zhengzhou, China.
Henan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transcriptomes of bread wheat Yunong 201 and its ethyl methanesulfonate derivative Yunong 3114 were obtained by next-sequencing technology. Single nucleotide variants (SNVs) in the wheat strains were explored and compared. A total of 5907 and 6287 non-synonymous SNVs were acquired for Yunong 201 and 3114, respectively. A total of 4021 genes with SNVs were obtained. The genes that underwent non-synonymous SNVs were significantly involved in ATP binding, protein phosphorylation, and cellular protein metabolic process. The heat map analysis also indicated that most of these mutant genes were significantly differentially expressed at different developmental stages. The SNVs in these genes possibly contribute to the longer kernel length of Yunong 3114. Our data provide useful information on wheat transcriptome for future studies on wheat functional genomics. This study could also help in illustrating the gene functions of the non-synonymous SNVs of Yunong 201 and 3114.

Indexed as

ethyl methanesulfonate (EMS)mutationnext-generation sequencingsingle nucleotide variations (SNVs)transcriptomewheat

Identifiers

PMID27551288
PMCPMC4976665
OpenAlexW2511376832

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.