Evidence map›Paper›PMID 27551285›Full record

ArticleFrontiers in plant science2016

Analysis of Magnaporthe oryzae Genome Reveals a Fungal Effector, Which Is Able to Induce Resistance Response in Transgenic Rice Line Containing Resistance Gene, Pi54.

Soham Ray, Pankaj K Singh, Deepak K Gupta, Ajay K Mahato, Chiranjib Sarkar, Rajeev Rathour, Nagendra K Singh, Tilak R Sharma

Abstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Article
  2. Article
  3. A century of advances in molecular genetics and breeding for sustainable resistance to rice blast disease.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Review
  9. The roles ofFrontiers in plant science · 2024
    Review
  10. Review
  11. Insertion of Transposable Elements inInternational journal of molecular sciences · 2023
    Article
  12. Article
  13. Review
  14. iTRAQ based proteomic analysis of rice lines having single or stacked blast resistance genes:Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
  15. Characterization and Genome Analysis ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  16. Review
  17. The Devastating Rice Blast Airborne PathogenPathogens (Basel, Switzerland) · 2023
    Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Soham RayNational Research Centre on Plant Biotechnology, Pusa Campus New Delhi, India.
Pankaj K SinghNational Research Centre on Plant Biotechnology, Pusa Campus New Delhi, India.
Deepak K GuptaNational Research Centre on Plant Biotechnology, Pusa Campus New Delhi, India.
Ajay K MahatoNational Research Centre on Plant Biotechnology, Pusa Campus New Delhi, India.
Chiranjib SarkarNational Research Centre on Plant Biotechnology, Pusa Campus New Delhi, India.
Rajeev RathourChaudhary Sarwan Kumar Himachal Pradesh Agricultural University Palampur, India.
Nagendra K SinghNational Research Centre on Plant Biotechnology, Pusa Campus New Delhi, India.
Tilak R SharmaNational Research Centre on Plant Biotechnology, Pusa Campus New Delhi, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice blast caused by Magnaporthe oryzae is one of the most important diseases of rice. Pi54, a rice gene that imparts resistance to M. oryzae isolates prevalent in India, was already cloned but its avirulent counterpart in the pathogen was not known. After decoding the whole genome of an avirulent isolate of M. oryzae, we predicted 11440 protein coding genes and then identified four candidate effector proteins which are exclusively expressed in the infectious structure, appresoria. In silico protein modeling followed by interaction analysis between Pi54 protein model and selected four candidate effector proteins models revealed that Mo-01947_9 protein model encoded by a gene located at chromosome 4 of M. oryzae, interacted best at the Leucine Rich Repeat domain of Pi54 protein model. Yeast-two-hybrid analysis showed that Mo-01947_9 protein physically interacts with Pi54 protein. Nicotiana benthamiana leaf infiltration assay confirmed induction of hypersensitive response in the presence of Pi54 gene in a heterologous system. Genetic complementation test also proved that Mo-01947_9 protein induces avirulence response in the pathogen in presence of Pi54 gene. Here, we report identification and cloning of a new fungal effector gene which interacts with blast resistance gene Pi54 in rice.

Indexed as

avirulence geneAvrPi54functional complementationprotein–protein interactionrice blastyeast-two-hybrid analysis

Identifiers

PMID27551285
PMCPMC4976503

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.