Evidence map›Paper›PMID 27551278›Full record

ArticleFrontiers in microbiology2016

The First Temporal and Spatial Assessment of Vibrio Diversity of the Surrounding Seawater of Coral Reefs in Ishigaki, Japan.

A K M R Amin, Gao Feng, Nurhidayu Al-Saari, Pedro M Meirelles, Yohei Yamazaki, Sayaka Mino, Fabiano L Thompson, Toko Sawabe, Tomoo Sawabe

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. A DiverseBiology · 2024
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  3. Resource diversity disturbs marineEcology and evolution · 2024
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  4. Article
  5. Review
  6. Article
  7. Article
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  9. SedimentaryApplied and environmental microbiology · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Spatiotemporal Dynamics ofFrontiers in microbiology · 2020
    Article
  14. Spatial Heterogeneity ofApplied and environmental microbiology · 2019
    Article
  15. Spatiotemporal Dynamics of Free-Living and Particle-AssociatedApplied and environmental microbiology · 2019
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

A K M R AminLaboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate Japan.
Gao FengLaboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate Japan.
Nurhidayu Al-SaariLaboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate Japan.
Pedro M MeirellesInstitute of Biology, SAGE-COPPE, Federal University of Rio de Janeiro, Rio de Janeiro Brazil.
Yohei YamazakiLaboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate Japan.
Sayaka MinoLaboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate Japan.
Fabiano L ThompsonInstitute of Biology, SAGE-COPPE, Federal University of Rio de Janeiro, Rio de Janeiro Brazil.
Toko SawabeDepartment of Nutrition, Hakodate Junior College, Hakodate Japan.
Tomoo SawabeLaboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coral reefs perform a major role in regulating marine biodiversity and serve as hotspot for highly dynamic and diverse microbiomes as holobionts. Corals around Ishigaki, however, are at risk due to tremendous stressors including elevation of seawater temperature, eutrophication and so on. However, no information is currently available on how Vibrio diversity fluctuates spatially and temporally due to environmental determinants in Ishigaki coral reef ecosystems. The aim of this study is to elucidate spatiotemporal Vibrio diversity dynamic at both community and population levels and to assess the environmental drivers correlated to Vibrio abundance and diversity. The Vibrio community identified based on pyrH gene phylogeny of 685 isolates from seawater directly connecting to Ishigaki coral holobionts consisted of 22 known and 12 potential novel Vibrionaceae species. The most prominent species were V. hyugaensis, V. owensii and V. harveyi followed by V. maritimus/V. variabillis, V. campbellii, V. coralliilyticus, and Photobacterium rosenbergii. The Vibrio community fluctuations, assessed by PCoA with UniFrac distance and clustering with Euclidiean distance were varied less not only by year but also by site. Interestingly, significant positive correlation was observed between rising seawater temperature and the abundance of V. campbellii (r = 0.62; P < 0.05) whereas the opposite was observed for V. owensii (r = -0.58; P < 0.05) and the C6 group of V. hyugaensis (r = -0.62; P < 0.05). AdaptML-based microhabitat differentiation revealed that V. harveyi, V. campbellii, P. rosenbergii, and V. coralliilyticus populations were less-ecologically distinctive whereas V. astriarenae and V. ishigakensis were ecologically diverse. This knowledge could be important clue for the future actions of coral conservation.

Indexed as

coral reefdiversity dynamicsenvironmental determinantsseawatervibrios

Identifiers

PMID27551278
PMCPMC4976104

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.